Detail Information

Basic Information:


  VIRBase ID:  

VHID00632786

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:           Rabgap1l:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-3-3p Rabgap1l
miRBase
Accession/Entrez ID		 MIMAT0001566 29809
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 5830411O09Rik//8430421H08Rik//9630005B12Rik//AW049894//Hh1//HHL//mKIAA0471

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Rabgap1l
chr1:162251275(-) A-I      intronic
chr1:162251260(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Rabgap1l
chr1:160321129(-) A-I intron -    22524474
chr1:160321144(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Rabgap1l
chr1:160219818-160219819(-) m6A 3'UTR       24981863//26404942
chr1:160219848-160219849(-) m6A 3'UTR       24981863//26404942
chr1:160220047-160220048(-) m6A 3'UTR       24981863
chr1:160220066-160220067(-) m6A 3'UTR       24981863
chr1:160220082-160220083(-) m6A 3'UTR       24981863
chr1:160220094-160220095(-) m6A 3'UTR       24981863
chr1:160220103-160220104(-) m6A 3'UTR       24981863
chr1:160220108-160220109(-) m6A 3'UTR       24981863
chr1:160222599-160222600(-) Y 3'UTR//exon       26075521
chr1:160223094-160223095(-) m6A 3'UTR       26404942//22608085
chr1:160223310-160223311(-) m6A 3'UTR       24981863
chr1:160223338-160223339(-) m6A 3'UTR       24981863
chr1:160223350-160223351(-) m6A 3'UTR       24981863
chr1:160223401-160223402(-) m6A 3'UTR       24981863
chr1:160223498-160223499(-) m6A 3'UTR       25683224//24981863
chr1:160223559-160223560(-) m6A 3'UTR       25683224//24981863//22608085
chr1:160223584-160223585(-) m6A 3'UTR       25683224//24981863//22608085
chr1:160223675-160223676(-) m6A 3'UTR       24981863
chr1:160223925-160223926(-) m6A 3'UTR       24981863
chr1:160223999-160224000(-) m6A 3'UTR       24981863//22608085
chr1:160224048-160224049(-) m6A 3'UTR       25683224//25456834//24981863//26404942//22608085
chr1:160224107-160224108(-) m6A 3'UTR       25683224//25456834//24981863//26404942//22608085
chr1:160224124-160224125(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr1:160224134-160224135(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr1:160224167-160224168(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr1:160224176-160224177(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr1:160224280-160224281(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085
chr1:160224291-160224292(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085
chr1:160224298-160224299(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr1:160224315-160224316(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr1:160224365-160224366(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085
chr1:160226054-160226055(-) m6A exon//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr1:160226165-160226166(-) m6A exon//intron       25412662
chr1:160226440-160226441(-) m6A exon//intron       24981863//25456834//22608085
chr1:160226448-160226449(-) m6A exon//intron       24981863//25456834//22608085
chr1:160226455-160226456(-) m6A exon//intron       25683224//25456834//24981863//25569111//22608085
chr1:160226517-160226518(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226522-160226523(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226532-160226533(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226538-160226539(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226569-160226570(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226592-160226593(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226599-160226600(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr1:160226661-160226662(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr1:160231834-160231835(-) m6A CDS//exon       24981863//25569111
chr1:160236628-160236629(-) m6A CDS//exon       24981863
chr1:160236654-160236655(-) m6A CDS//exon       24981863
chr1:160236688-160236689(-) m6A CDS//exon       24981863
chr1:160238538-160238539(-) m6A CDS//exon       25683224//24981863
chr1:160238571-160238572(-) m6A CDS//exon       25683224//24981863
chr1:160238627-160238628(-) m6A CDS//exon       25683224//24981863
chr1:160247500-160247501(-) m6A CDS//exon       25683224//24981863
chr1:160247527-160247528(-) m6A CDS//exon       25683224//24981863
chr1:160247561-160247562(-) m6A CDS//exon       25683224//24981863
chr1:160247596-160247597(-) m6A exon//intron       25683224//24981863
chr1:160256635-160256636(-) m6A 3'UTR//intron       24981863
chr1:160256645-160256646(-) m6A 3'UTR//intron       24981863
chr1:160256692-160256693(-) m6A 3'UTR//intron       24981863
chr1:160256752-160256753(-) m6A 3'UTR//intron       24981863
chr1:160256765-160256766(-) m6A 3'UTR//intron       24981863
chr1:160256997-160256998(-) m6A 3'UTR//intron       24981863
chr1:160257053-160257054(-) m6A 3'UTR//intron       24981863//25569111
chr1:160257074-160257075(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr1:160257085-160257086(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr1:160257098-160257099(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr1:160257151-160257152(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085
chr1:160257461-160257462(-) m6A 3'UTR//CDS//exon       24981863
chr1:160283896-160283897(-) m6A exon//intron       25683224//24981863
chr1:160307611-160307612(-) m6A 3'UTR//exon//intron       25456834
chr1:160307686-160307687(-) m6A 3'UTR//exon//intron       25456834
chr1:160307696-160307697(-) m6A 3'UTR//exon//intron       25456834
chr1:160342150-160342151(-) m6A CDS       25683224//22608085
chr1:160351265-160351266(-) m6A CDS//intron       25683224//22608085
chr1:160351320-160351321(-) m6A CDS//intron       25683224//22608085
chr1:160351548-160351549(-) m6A 5'UTR//intron       25683224//22608085
chr1:160740894-160740895(-) m6A 5'UTR       25412662//22608085
chr1:160792785-160792786(-) m6A 5'UTR//intron       25412662//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Rabgap1l
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-3-3p
Interactor2: Rabgap1l

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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