Basic Information:

  VIRBase ID:  

VHID00631796

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:  MIMAT0001566          Apc:  NM_007462     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-3-3p	Apc
miRBase Accession/Entrez ID	MIMAT0001566	11789
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AI047805//AU020952//AW124434//CC1//M//mAPC//Min

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Apc	chr18:34220972-34220973(+) m6A 5'UTR       25412662//24981863//25569111//22608085 chr18:34221022-34221023(+) m6A 5'UTR//exon       25412662//24981863//25569111//22608085 chr18:34247700-34247701(+) m6A 5'UTR//exon//intron       25683224//24981863//25412662 chr18:34261080-34261081(+) m6A CDS//exon//intron       25683224//24981863//25412662 chr18:34262232-34262233(+) m6A exon//intron       25683224//22608085 chr18:34262260-34262261(+) m6A exon//intron       25683224//22608085 chr18:34262286-34262287(+) m6A exon//intron       25683224//22608085 chr18:34262303-34262304(+) m6A exon//intron       25683224//22608085 chr18:34266166-34266167(+) m6A 3'UTR//intron       25683224//24981863//22608085 chr18:34266171-34266172(+) m6A 3'UTR//intron       25683224//24981863//22608085 chr18:34268336-34268337(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr18:34268350-34268351(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr18:34269089-34269090(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr18:34269195-34269196(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr18:34272482-34272483(+) m6A 3'UTR//CDS//exon       25683224//24981863//22608085 chr18:34272506-34272507(+) m6A 3'UTR//CDS//exon       25683224//24981863//22608085 chr18:34276575-34276576(+) m6A 3'UTR//CDS//exon       25683224//24981863//22608085 chr18:34276579-34276580(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr18:34276657-34276658(+) m6A CDS//exon       25683224//25412662//24981863//22608085 chr18:34279302-34279303(+) m6A CDS//exon//intron       25683224//25412662//24981863//22608085 chr18:34290045-34290046(+) m6A CDS//intron       25683224//22608085 chr18:34290066-34290067(+) m6A CDS//intron       25683224//22608085 chr18:34296057-34296058(+) m6A CDS//exon       25683224 chr18:34296123-34296124(+) m6A CDS//exon       25683224//25569111 chr18:34298485-34298486(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr18:34298513-34298514(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34298585-34298586(+) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111//26404942//22608085 chr18:34298721-34298722(+) m6A CDS//exon       25683224//22608085 chr18:34298743-34298744(+) m6A CDS//exon       25683224//22608085 chr18:34298772-34298773(+) m6A CDS//exon       25683224//22608085 chr18:34298783-34298784(+) m6A CDS//exon       25683224//22608085 chr18:34298789-34298790(+) m6A CDS//exon       25683224//22608085 chr18:34298795-34298796(+) m6A CDS//exon       25683224//22608085 chr18:34300056-34300057(+) m6A CDS//exon       25683224//22608085 chr18:34300113-34300114(+) m6A exon//intron       25683224//22608085 chr18:34300147-34300148(+) m6A exon//intron       25683224//22608085 chr18:34300160-34300161(+) m6A exon//intron       25683224//22608085 chr18:34304586-34304587(+) m6A CDS//exon//intron       25683224//22608085 chr18:34304618-34304619(+) m6A CDS//exon//intron       25683224//22608085 chr18:34304693-34304694(+) m6A CDS//exon//intron       25683224//22608085 chr18:34305632-34305633(+) m6A CDS//exon//intron       25683224//22608085 chr18:34310729-34310730(+) m6A CDS//exon       25683224//25569111//22608085 chr18:34310824-34310825(+) m6A 3'UTR//CDS       25683224//24981863//25569111 chr18:34310900-34310901(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34312021-34312022(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34312035-34312036(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34312092-34312093(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34312126-34312127(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34312144-34312145(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34312171-34312172(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34312240-34312241(+) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111//26404942//22608085 chr18:34312313-34312314(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942//22608085 chr18:34312359-34312360(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942//22608085 chr18:34312415-34312416(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34312480-34312481(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34312498-34312499(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34312570-34312571(+) m6A 3'UTR//CDS       25683224//24981863//25569111//22608085 chr18:34312591-34312592(+) m6A 3'UTR//CDS       25683224//24981863//25569111//22608085 chr18:34312659-34312660(+) m6A 3'UTR//CDS       25683224//24981863//25569111//22608085 chr18:34312843-34312844(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942//22608085 chr18:34312881-34312882(+) m6A 3'UTR//CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34312985-34312986(+) m6A 3'UTR//CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34313105-34313106(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34313155-34313156(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr18:34313198-34313199(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr18:34313243-34313244(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr18:34313260-34313261(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr18:34313300-34313301(+) m6A 3'UTR//CDS       25683224//24981863//25456834//25569111//22608085 chr18:34313327-34313328(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942//22608085 chr18:34313364-34313365(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942//22608085 chr18:34313379-34313380(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942//22608085 chr18:34313422-34313423(+) m6A 3'UTR//CDS       24981863 chr18:34313462-34313463(+) m6A 3'UTR//CDS       24981863 chr18:34313498-34313499(+) m6A 3'UTR//CDS       24981863 chr18:34313522-34313523(+) m6A 3'UTR//CDS       24981863 chr18:34313558-34313559(+) m6A 3'UTR//CDS       24981863 chr18:34313624-34313625(+) m6A 3'UTR//CDS       24981863 chr18:34313669-34313670(+) m6A 3'UTR//CDS       24981863//25569111 chr18:34313675-34313676(+) m6A 3'UTR//CDS       24981863//25569111 chr18:34313772-34313773(+) m6A 3'UTR//CDS       24981863//25569111//22608085 chr18:34313817-34313818(+) m6A 3'UTR//CDS       24981863//25569111//22608085 chr18:34313826-34313827(+) m6A 3'UTR//CDS       24981863//25569111//22608085 chr18:34313842-34313843(+) m6A 3'UTR//CDS       24981863//25569111//22608085 chr18:34313919-34313920(+) m6A 3'UTR//CDS       24981863//25569111//26404942//22608085 chr18:34313955-34313956(+) m6A 3'UTR//CDS       25683224//24981863//26404942 chr18:34314044-34314045(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942 chr18:34314150-34314151(+) m6A 3'UTR//CDS       25683224//24981863//25569111//26404942 chr18:34314170-34314171(+) m6A 3'UTR//CDS       25683224//24981863//25569111 chr18:34314186-34314187(+) m6A 3'UTR//CDS       25683224//24981863//25569111 chr18:34314336-34314337(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//26404942//22608085 chr18:34314360-34314361(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//26404942//22608085 chr18:34314381-34314382(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34314456-34314457(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34314657-34314658(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314668-34314669(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314691-34314692(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314730-34314731(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314824-34314825(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314834-34314835(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314869-34314870(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314888-34314889(+) Y CDS//exon       26075521 chr18:34314893-34314894(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314929-34314930(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314984-34314985(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34314994-34314995(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34315180-34315181(+) m6A CDS       24981863//25569111//22608085 chr18:34315288-34315289(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34315342-34315343(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34315426-34315427(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315455-34315456(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315465-34315466(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315474-34315475(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315484-34315485(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315497-34315498(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315540-34315541(+) m6A CDS       25683224//24981863//25456834//25569111//22608085 chr18:34315567-34315568(+) m6A CDS       25683224//24981863//25456834//25569111//22608085 chr18:34315742-34315743(+) m6A CDS       25683224//25412662//24981863//25569111//26404942//22608085 chr18:34315747-34315748(+) m6A CDS       25683224//25412662//24981863//25569111//26404942//22608085 chr18:34315790-34315791(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34315801-34315802(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34315817-34315818(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315832-34315833(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315865-34315866(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315895-34315896(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34315981-34315982(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34316003-34316004(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34316021-34316022(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34316095-34316096(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34316119-34316120(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34316213-34316214(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34316272-34316273(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34316315-34316316(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34316374-34316375(+) m6A CDS       25683224//24981863//25569111//26404942 chr18:34316429-34316430(+) m6A CDS       25683224//24981863//25569111 chr18:34316558-34316559(+) m6A CDS       25683224//24981863 chr18:34316605-34316606(+) m6A CDS       25683224//24981863//25569111 chr18:34316693-34316694(+) m6A CDS       25683224//24981863//25569111 chr18:34316710-34316711(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34316814-34316815(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34316871-34316872(+) m6A CDS       25683224//24981863//25569111//22608085 chr18:34316916-34316917(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34316968-34316969(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34316984-34316985(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34317031-34317032(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34317074-34317075(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34317093-34317094(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34317164-34317165(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34317191-34317192(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34317251-34317252(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34317296-34317297(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34317340-34317341(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34317416-34317417(+) m6A CDS       25683224//24981863//25456834//25569111//26404942//22608085 chr18:34317461-34317462(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34317492-34317493(+) m6A CDS       25683224//24981863//25569111 chr18:34317665-34317666(+) m6A CDS       25683224//24981863//25569111//26404942 chr18:34317687-34317688(+) m6A CDS       25683224//24981863//25569111//26404942//22608085 chr18:34317701-34317702(+) m6A CDS       25683224//25412662//24981863//25569111//26404942//22608085 chr18:34317710-34317711(+) m6A CDS       25683224//25412662//24981863//25569111//26404942//22608085 chr18:34317750-34317751(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34317848-34317849(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34317862-34317863(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34317882-34317883(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34318011-34318012(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318039-34318040(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318147-34318148(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318160-34318161(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318191-34318192(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318206-34318207(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318244-34318245(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318254-34318255(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318265-34318266(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34318271-34318272(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34318299-34318300(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34318374-34318375(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr18:34318435-34318436(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr18:34318506-34318507(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34318594-34318595(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr18:34318638-34318639(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34318655-34318656(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr18:34318719-34318720(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr18:34319688-34319689(+) m6A 3'UTR       26404942//22608085 chr18:34319700-34319701(+) m6A 3'UTR       26404942//22608085 chr18:34320766-34320767(+) m6A 3'UTR       25683224//22608085 chr18:34320959-34320960(+) m6A 3'UTR       25683224//26404942//22608085 chr18:34320975-34320976(+) m6A 3'UTR       25683224//24981863//26404942//22608085 chr18:34321010-34321011(+) m6A 3'UTR       25683224//24981863//26404942//22608085 chr18:34321162-34321163(+) m6A 3'UTR       25683224//22608085 chr18:34321261-34321262(+) m6A 3'UTR       25683224//22608085 chr18:34321318-34321319(+) m6A 3'UTR       25683224//22608085 chr18:34321520-34321521(+) m6A 3'UTR       24981863//26404942 chr18:34321586-34321587(+) m6A 3'UTR       24981863//26404942 chr18:34321964-34321965(+) m6A 3'UTR       25683224//22608085 chr18:34321980-34321981(+) m6A 3'UTR       25683224//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Apc	Pseudopodium Migrating cells     18451862

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-3-3p
Interactor2: Apc

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar