Basic Information:

  VIRBase ID:  

VHID00631396

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-2-3p:  MIMAT0001565          Smg5:  NM_178246     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-2-3p	Smg5
miRBase Accession/Entrez ID	MIMAT0001565	229512
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	BC024683//mKIAA1089

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Smg5	chr3:88352181(+) A-I intron -    22524474 chr3:88352191(+) A-I intron -    22524474 chr3:88352235(+) A-I intron -    22524474 chr3:88352242(+) A-I intron -    22524474 chr3:88352277(+) A-I intron -    22524474 chr3:88352600(+) A-I intron -    22524474 chr3:88352643(+) A-I intron -    16940548 chr3:88352645(+) A-I intron -    16940548

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Smg5	chr3:88336458-88336459(+) m6A CDS//exon       25412662//24981863//25569111 chr3:88349179-88349180(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr3:88349189-88349190(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr3:88349238-88349239(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr3:88349383-88349384(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr3:88349404-88349405(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr3:88350784-88350785(+) m6A CDS//exon       25412662//25569111//22608085 chr3:88350801-88350802(+) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr3:88350982-88350983(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr3:88351206-88351207(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr3:88351259-88351260(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr3:88351275-88351276(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr3:88351296-88351297(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr3:88351325-88351326(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr3:88351454-88351455(+) m6A CDS//exon       24981863//25569111 chr3:88351516-88351517(+) m6A CDS//exon       24981863//25569111 chr3:88351563-88351564(+) m6A CDS//exon       25683224//24981863//25569111 chr3:88351576-88351577(+) m6A CDS//exon       25683224//25569111 chr3:88358303-88358304(+) m6A exon//intron       25683224 chr3:88358332-88358333(+) m6A exon//intron       25683224 chr3:88358388-88358389(+) m6A exon//intron       25683224 chr3:88358402-88358403(+) m6A exon//intron       25683224 chr3:88358414-88358415(+) m6A exon//intron       25683224 chr3:88359182-88359183(+) m6A CDS//exon       24981863//22608085 chr3:88359578-88359579(+) m6A CDS//exon       24981863//22608085 chr3:88359634-88359635(+) m6A CDS//exon       25683224//24981863//22608085 chr3:88360378-88360379(+) m6A CDS//exon       25683224//24981863//22608085 chr3:88360538-88360539(+) m6A exon//intron       25683224//24981863 chr3:88360555-88360556(+) m6A exon//intron       25683224//24981863 chr3:88360754-88360755(+) m6A CDS//exon       25683224 chr3:88360773-88360774(+) m6A CDS//exon       25683224 chr3:88360783-88360784(+) m6A CDS//exon       25683224 chr3:88360818-88360819(+) m6A CDS//exon       25683224 chr3:88360860-88360861(+) m6A CDS//exon       25683224//22608085 chr3:88361076-88361077(+) m6A CDS//exon       25683224//22608085 chr3:88361109-88361110(+) m6A 3'UTR//exon       25683224//22608085 chr3:88361173-88361174(+) m6A 3'UTR//exon       25683224//24981863//22608085 chr3:88361205-88361206(+) m6A 3'UTR//exon       24981863//22608085 chr3:88361219-88361220(+) m6A 3'UTR//exon       24981863//22608085 chr3:88361347-88361348(+) m6A 3'UTR       24981863//25569111 chr3:88361372-88361373(+) m6A 3'UTR       24981863//25456834//25569111 chr3:88361441-88361442(+) m6A 3'UTR       24981863//25456834//25569111 chr3:88361943-88361944(+) m6A 3'UTR       25412662//22608085 chr3:88361970-88361971(+) m6A 3'UTR       25412662//22608085 chr3:88362296-88362297(+) m6A 3'UTR       25569111 chr3:88362303-88362304(+) m6A 3'UTR       25569111 chr3:88362320-88362321(+) m6A 3'UTR       25569111

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-2-3p
Interactor2: Smg5

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar