Detail Information

Basic Information:


  VIRBase ID:  

VHID00631333

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-2-3p:           5031439G07Rik:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-2-3p 5031439G07Rik
miRBase
Accession/Entrez ID		 MIMAT0001565 223739
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - AW554572//mKIAA0930

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR 5031439G07Rik
chr15:84783191(-) A-I      intronic
chr15:84782912(-) A-I      intronic
chr15:84783201(-) A-I      intronic
chr15:84783187(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED 5031439G07Rik
chr15:84952482(-) A-I intron -    22524474
chr15:84952757(-) A-I intron -    22524474
chr15:84952761(-) A-I intron -    22524474
chr15:84952771(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase 5031439G07Rik
chr15:84944092-84944093(-) m6A 3'UTR       24981863//22608085
chr15:84944233-84944234(-) m6A 3'UTR       24981863//25569111
chr15:84944240-84944241(-) m6A 3'UTR       24981863//25569111
chr15:84944323-84944324(-) m6A 3'UTR       24981863
chr15:84947558-84947559(-) m6A 3'UTR       25683224//22608085
chr15:84947580-84947581(-) m6A 3'UTR       25683224//22608085
chr15:84948156-84948157(-) m6A 3'UTR//exon       25683224//24981863//25569111
chr15:84948209-84948210(-) m6A 3'UTR//exon       25683224//24981863//25569111
chr15:84948330-84948331(-) m6A 3'UTR//exon       25683224//25412662//25569111
chr15:84948439-84948440(-) m6A 3'UTR//exon       25683224//25412662//24981863//25569111
chr15:84948465-84948466(-) m6A 3'UTR//exon       25683224//25412662//24981863//25569111
chr15:84948476-84948477(-) m6A 3'UTR//exon       25683224//25412662//24981863//25569111
chr15:84948602-84948603(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111
chr15:84948646-84948647(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr15:84948723-84948724(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr15:84948799-84948800(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr15:84948905-84948906(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr15:84948960-84948961(-) m6A 3'UTR//exon       25683224//25456834//24981863//25412662//25569111//22608085
chr15:84949064-84949065(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr15:84949076-84949077(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr15:84949255-84949256(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr15:84949609-84949610(-) m6A CDS//exon       24981863//25569111//22608085
chr15:84949624-84949625(-) m6A CDS//exon       25412662//24981863//25569111//22608085
chr15:84950685-84950686(-) m6A CDS//exon       25412662//22608085
chr15:84950736-84950737(-) m6A CDS//exon       25412662
chr15:84950788-84950789(-) m6A exon//intron       25412662
chr15:84951699-84951700(-) m6A exon//intron       22608085
chr15:84955718-84955719(-) m6A CDS//exon       25683224//25412662
chr15:84955821-84955822(-) m6A CDS//exon       25683224//25412662
chr15:84955884-84955885(-) m6A CDS//exon       25683224//25412662//22608085
chr15:84960556-84960557(-) m6A CDS//exon       25683224//25412662//22608085
chr15:84960690-84960691(-) m6A exon//intron       25683224
chr15:84987706-84987707(-) m6A 5'UTR//CDS//intron       25412662
chr15:84988522-84988523(-) m6A exon       25412662
chr15:84988540-84988541(-) m6A exon       25412662

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate 5031439G07Rik
Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-2-3p
Interactor2: 5031439G07Rik

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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