Detail Information

Basic Information:


  VIRBase ID:  

VHID00631167

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-2-3p:           Ddhd1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-2-3p Ddhd1
miRBase
Accession/Entrez ID		 MIMAT0001565 114874
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - Mir5131//PA-PLA1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Ddhd1
chr14:46232314(-) A-I      intronic
chr14:46232278(-) A-I      intronic
chr14:46232292(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Ddhd1
chr14:45612603(-) A-I intron -    22524474
chr14:45612617(-) A-I intron -    22524474
chr14:45612639(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ddhd1
chr14:45594471-45594472(-) m6A 3'UTR//exon       25683224//24981863//25456834
chr14:45594541-45594542(-) m6A 3'UTR//exon       25683224//24981863
chr14:45594984-45594985(-) m6A 3'UTR//exon       26404942
chr14:45595009-45595010(-) m6A 3'UTR//exon       24981863//26404942
chr14:45595123-45595124(-) m6A 3'UTR//exon//intron       24981863//22608085
chr14:45595234-45595235(-) m6A 3'UTR//exon//intron       25456834//24981863//22608085
chr14:45595342-45595343(-) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085
chr14:45595390-45595391(-) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085//22575960
chr14:45595422-45595423(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr14:45595442-45595443(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr14:45595481-45595482(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr14:45595527-45595528(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr14:45595635-45595636(-) m6A 3'UTR//CDS//exon       25683224//24981863//25569111//22608085
chr14:45595653-45595654(-) m6A 3'UTR//CDS//exon       25683224//24981863//25569111//22608085
chr14:45595659-45595660(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr14:45599177-45599178(-) m6A 3'UTR//CDS//exon//intron       25683224//24981863
chr14:45601603-45601604(-) m6A 3'UTR//CDS//exon       25683224//24981863
chr14:45601665-45601666(-) m6A 3'UTR//CDS//exon       25683224//24981863
chr14:45605164-45605165(-) Y 3'UTR//CDS//exon       26075521
chr14:45608957-45608958(-) m6A 3'UTR//CDS//exon       25683224//22608085
chr14:45609051-45609052(-) m6A exon//intron       25683224//25412662
chr14:45609085-45609086(-) m6A exon//intron       25683224//25412662
chr14:45609312-45609313(-) m6A exon//intron       25683224//24981863//25456834
chr14:45609321-45609322(-) m6A exon//intron       25683224//24981863//25456834
chr14:45610595-45610596(-) m6A 3'UTR//CDS//exon       25683224//24981863//25456834//25569111//22608085
chr14:45610689-45610690(-) m6A 3'UTR//CDS//exon       25683224//22608085
chr14:45619277-45619278(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr14:45619298-45619299(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr14:45619309-45619310(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr14:45619344-45619345(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr14:45629658-45629659(-) m6A CDS//exon       25683224//25456834//24981863
chr14:45629724-45629725(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr14:45657223-45657224(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr14:45657364-45657365(-) m6A CDS//exon       25412662//24981863//25569111
chr14:45657412-45657413(-) m6A CDS//exon       25456834//25412662//24981863//25569111
chr14:45657452-45657453(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr14:45657464-45657465(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr14:45657518-45657519(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr14:45657526-45657527(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr14:45657625-45657626(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr14:45657664-45657665(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr14:45657776-45657777(-) m6A CDS       25683224//25412662//24981863//25569111
chr14:45657796-45657797(-) m6A CDS       25683224//25412662//24981863//25569111
chr14:45658006-45658007(-) m6A CDS       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Ddhd1
Nucleus Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-2-3p
Interactor2: Ddhd1

Evidence Support:


Prediction-Evidence Rep
Support Database RepTar

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