Detail Information

Basic Information:


  VIRBase ID:  

VHID00630958

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-2-3p:           Msi2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-2-3p Msi2
miRBase
Accession/Entrez ID		 MIMAT0001565 76626
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 1700105C15Rik//AI451722//AI563628//AW489193//msi//Msi2h//Musa

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Msi2
chr11:88165677(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Msi2
chr11:88352175(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Msi2
chr11:88340209-88340210(-) m6A 3'UTR       24981863
chr11:88340238-88340239(-) m6A 3'UTR       25683224//24981863
chr11:88340264-88340265(-) m6A 3'UTR       25683224//24981863
chr11:88340307-88340308(-) m6A 3'UTR       25683224//24981863
chr11:88340314-88340315(-) m6A 3'UTR       25683224//24981863
chr11:88342291-88342292(-) m6A 3'UTR       24981863
chr11:88342313-88342314(-) m6A 3'UTR       24981863
chr11:88342329-88342330(-) m6A 3'UTR       24981863
chr11:88342360-88342361(-) m6A 3'UTR       24981863
chr11:88342395-88342396(-) m6A 3'UTR       24981863
chr11:88342403-88342404(-) m6A 3'UTR       24981863
chr11:88343713-88343714(-) m6A 3'UTR       24981863//22608085
chr11:88343797-88343798(-) m6A 3'UTR       25683224
chr11:88344026-88344027(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr11:88344073-88344074(-) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr11:88344098-88344099(-) Y 3'UTR//exon       26075521
chr11:88344128-88344129(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr11:88344142-88344143(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr11:88344150-88344151(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr11:88344582-88344583(-) m6A 3'UTR       24981863//22608085
chr11:88344588-88344589(-) m6A 3'UTR       24981863//22608085
chr11:88344635-88344636(-) m6A 3'UTR       24981863//22608085
chr11:88347122-88347123(-) m6A CDS       25683224//22608085
chr11:88348853-88348854(-) m6A CDS       25683224//22608085
chr11:88716567-88716568(-) m6A CDS//exon       25683224//22608085
chr11:88717358-88717359(-) m6A CDS//exon       25683224//22608085
chr11:88717713-88717714(-) m6A CDS//exon       25683224//22608085
chr11:88717726-88717727(-) m6A CDS//exon       25683224//22608085
chr11:88718460-88718461(-) m6A 5'UTR       25412662
chr11:88718471-88718472(-) m6A 5'UTR       25412662

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-2-3p
Interactor2: Msi2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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