Basic Information:

  VIRBase ID:  

VHID00630066

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-2-3p:  MIMAT0001565          Itgb1:  NM_010578     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-2-3p	Itgb1
miRBase Accession/Entrez ID	MIMAT0001565	16412
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	4633401G24Rik//AA409975//AA960159//CD29//Fn//Fnrb//Gm9863//gpIIa

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Itgb1	chr8:128685734-128685735(+) m6A 5'UTR       25412662//24981863//25569111 chr8:128685777-128685778(+) m6A 5'UTR       25412662//24981863//25456834//25569111 chr8:128685815-128685816(+) m6A 5'UTR       25412662//24981863//25456834//25569111 chr8:128685854-128685855(+) m6A 5'UTR       25412662//24981863//25456834//25569111 chr8:128685893-128685894(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr8:128705475-128705476(+) m6A CDS//exon       24981863//25569111//22608085 chr8:128710360-128710361(+) m6A CDS//exon//intron       24981863//22608085 chr8:128710427-128710428(+) m6A CDS//exon//intron       24981863//22608085 chr8:128710555-128710556(+) m6A exon//intron       24981863 chr8:128710594-128710595(+) m6A exon//intron       24981863 chr8:128710630-128710631(+) m6A exon//intron       22608085 chr8:128710643-128710644(+) m6A exon//intron       22608085 chr8:128713211-128713212(+) m6A CDS       22608085 chr8:128713366-128713367(+) m6A 3'UTR//CDS       22608085 chr8:128713949-128713950(+) m6A 3'UTR//CDS       22608085 chr8:128714008-128714009(+) m6A 3'UTR//CDS       22608085 chr8:128714013-128714014(+) m6A 3'UTR//CDS       22608085 chr8:128714080-128714081(+) m6A 3'UTR//CDS       22608085 chr8:128714109-128714110(+) m6A 3'UTR//CDS       22608085 chr8:128720342-128720343(+) m6A 3'UTR//CDS       22608085 chr8:128720451-128720452(+) m6A 3'UTR//CDS       24981863//22608085 chr8:128722436-128722437(+) m6A 3'UTR//CDS       24981863 chr8:128722445-128722446(+) m6A 3'UTR//CDS       24981863 chr8:128722472-128722473(+) m6A 3'UTR//CDS       24981863//26404942 chr8:128722515-128722516(+) m6A 3'UTR//CDS       24981863 chr8:128722884-128722885(+) m6A 3'UTR//CDS       24981863//22608085 chr8:128722994-128722995(+) m6A 3'UTR//CDS       22608085 chr8:128723003-128723004(+) m6A 3'UTR//CDS       22608085 chr8:128724239-128724240(+) m6A 3'UTR//CDS       22608085 chr8:128724347-128724348(+) m6A 3'UTR//CDS       22608085 chr8:128726110-128726111(+) m6A 3'UTR//CDS       25569111//22608085 chr8:128726181-128726182(+) m6A 3'UTR//CDS       25569111//22608085 chr8:128727031-128727032(+) m6A CDS//intron       22608085 chr8:128732267-128732268(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22575960 chr8:128732278-128732279(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22575960 chr8:128732345-128732346(+) m6A 3'UTR       25456834//25412662//24981863//25569111//26404942//22575960 chr8:128732429-128732430(+) m6A 3'UTR       25456834//25412662//24981863//25569111//26404942//22575960 chr8:128732487-128732488(+) m6A 3'UTR       25412662//24981863//25456834//25569111//22575960 chr8:128732565-128732566(+) m6A 3'UTR       24981863//25569111 chr8:128732667-128732668(+) m6A 3'UTR       25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Itgb1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-2-3p
Interactor2: Itgb1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar