Basic Information:

  VIRBase ID:  

VHID00629789

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-1-3p:  MIMAT0001564          Trim71:  NM_001042503     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-1-3p	Trim71
miRBase Accession/Entrez ID	MIMAT0001564	636931
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	2610206G21Rik//AL022943//Gm1127//Li//lin//lin-41//Lin41//mLi//mlin//mlin-41//mLin41

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Trim71	chr9:114507225-114507226(-) m6A 3'UTR       25683224 chr9:114507326-114507327(-) m6A 3'UTR       25683224 chr9:114507405-114507406(-) m6A 3'UTR       25683224 chr9:114507491-114507492(-) m6A 3'UTR       25683224 chr9:114507605-114507606(-) m6A 3'UTR       25683224 chr9:114507622-114507623(-) m6A 3'UTR       25683224 chr9:114508147-114508148(-) m6A 3'UTR       25569111 chr9:114508250-114508251(-) m6A 3'UTR       25683224//25456834//25569111 chr9:114508320-114508321(-) m6A 3'UTR       25683224//25456834//25569111 chr9:114508328-114508329(-) m6A 3'UTR       25683224//25456834//25569111 chr9:114508403-114508404(-) m6A 3'UTR       25683224//25456834//25569111 chr9:114509878-114509879(-) m6A 3'UTR       25683224 chr9:114509946-114509947(-) m6A 3'UTR       25683224 chr9:114509972-114509973(-) m6A 3'UTR       25683224 chr9:114510058-114510059(-) m6A 3'UTR       25683224 chr9:114510116-114510117(-) m6A 3'UTR       25683224 chr9:114510148-114510149(-) m6A 3'UTR       25683224 chr9:114510163-114510164(-) m6A 3'UTR       25683224 chr9:114510985-114510986(-) m6A 3'UTR       25683224 chr9:114511011-114511012(-) m6A 3'UTR       25683224 chr9:114511043-114511044(-) m6A 3'UTR       25683224 chr9:114511064-114511065(-) m6A 3'UTR       25683224 chr9:114511071-114511072(-) m6A 3'UTR       25683224 chr9:114511088-114511089(-) m6A 3'UTR       25683224 chr9:114511226-114511227(-) m6A 3'UTR       25683224 chr9:114511246-114511247(-) m6A 3'UTR       25683224 chr9:114511594-114511595(-) m6A 3'UTR       25683224 chr9:114511614-114511615(-) m6A 3'UTR       25683224 chr9:114511671-114511672(-) m6A 3'UTR       25683224 chr9:114511733-114511734(-) m6A 3'UTR       25683224 chr9:114511794-114511795(-) m6A 3'UTR       25683224//25569111 chr9:114511811-114511812(-) m6A 3'UTR       25683224//25569111 chr9:114511847-114511848(-) m6A 3'UTR       25683224//25569111 chr9:114511859-114511860(-) m6A 3'UTR       25683224 chr9:114512503-114512504(-) m6A 3'UTR       25456834//25569111 chr9:114512675-114512676(-) m6A CDS       25683224//25456834//25569111//22608085 chr9:114512726-114512727(-) m6A CDS       25683224//25456834//25569111 chr9:114512843-114512844(-) m6A CDS       25683224//25456834//25569111 chr9:114513047-114513048(-) m6A CDS       25683224//25456834//25569111 chr9:114513067-114513068(-) m6A CDS       25683224//25456834//25569111 chr9:114513098-114513099(-) m6A CDS       25683224//25456834//25569111 chr9:114513233-114513234(-) m6A CDS       25683224//25456834//25569111 chr9:114513533-114513534(-) m6A CDS       25683224//25456834//25569111 chr9:114513650-114513651(-) m6A CDS       25683224//25456834//25569111 chr9:114513915-114513916(-) m6A CDS       25683224//25569111 chr9:114513947-114513948(-) m6A CDS       25683224//25569111 chr9:114513965-114513966(-) m6A CDS       25683224//25412662//25569111 chr9:114515834-114515835(-) m6A CDS       25683224//25569111 chr9:114515845-114515846(-) m6A CDS       25683224//25569111 chr9:114525014-114525015(-) m6A CDS       25683224 chr9:114562452-114562453(-) m6A CDS       25683224//25569111 chr9:114562505-114562506(-) m6A CDS       25683224//25569111 chr9:114563005-114563006(-) m6A CDS       25683224//25569111 chr9:114563098-114563099(-) m6A CDS       25683224//25456834//25569111 chr9:114563237-114563238(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563277-114563278(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563285-114563286(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563302-114563303(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563326-114563327(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563336-114563337(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563350-114563351(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563429-114563430(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563435-114563436(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563646-114563647(-) m6A 5'UTR       25683224//25569111 chr9:114563697-114563698(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563779-114563780(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114563984-114563985(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114564018-114564019(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114564210-114564211(-) m6A 5'UTR       25683224//25456834//25569111 chr9:114564276-114564277(-) m6A 5'UTR       25683224//25456834//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Trim71	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-1-3p
Interactor2: Trim71

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar