Basic Information:

  VIRBase ID:  

VHID00629596

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-1-3p:  MIMAT0001564          Srgap3:  NM_080448     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-1-3p	Srgap3
miRBase Accession/Entrez ID	MIMAT0001564	259302
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AI452337//Arhg//Arhgap14//D130026O08Rik//Gbi//MEGAP//mKIAA0411//WRP

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Srgap3	chr6:112718170-112718171(-) m6A 3'UTR       25683224//24981863 chr6:112718180-112718181(-) m6A 3'UTR       25683224//24981863 chr6:112718367-112718368(-) m6A 3'UTR       25683224//24981863 chr6:112718407-112718408(-) m6A 3'UTR       25683224//24981863//22608085 chr6:112718458-112718459(-) m6A 3'UTR       25683224//24981863//25456834//22608085 chr6:112718513-112718514(-) m6A 3'UTR       25683224//24981863//25456834 chr6:112718532-112718533(-) m6A 3'UTR       25683224//24981863//25456834 chr6:112718545-112718546(-) m6A 3'UTR       25683224//24981863//25456834//25412662 chr6:112718690-112718691(-) m6A 3'UTR       25683224//25412662//24981863//22608085 chr6:112718795-112718796(-) m6A 3'UTR       25683224//25412662//24981863//25456834//26404942//22608085 chr6:112718891-112718892(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112718902-112718903(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112718973-112718974(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112719100-112719101(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112719109-112719110(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112719137-112719138(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112719176-112719177(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112719258-112719259(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112719331-112719332(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112719399-112719400(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112719486-112719487(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112719509-112719510(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112719565-112719566(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112719576-112719577(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112719602-112719603(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942 chr6:112720179-112720180(-) m6A 3'UTR       25412662//24981863 chr6:112720668-112720669(-) m6A 3'UTR       25683224//22608085 chr6:112720759-112720760(-) m6A 3'UTR       25683224//22608085 chr6:112721552-112721553(-) m6A 3'UTR       25683224//24981863 chr6:112721667-112721668(-) m6A 3'UTR       25683224//24981863 chr6:112721772-112721773(-) m6A 3'UTR       25683224//24981863 chr6:112721792-112721793(-) m6A 3'UTR       25683224//24981863//25456834//22608085 chr6:112721814-112721815(-) m6A 3'UTR       25683224//24981863//25456834//22608085 chr6:112721821-112721822(-) m6A 3'UTR       25683224//24981863//25456834//22608085 chr6:112721830-112721831(-) m6A 3'UTR       25683224//24981863//25456834//22608085 chr6:112721840-112721841(-) m6A 3'UTR       25683224//25412662//24981863//25456834//22608085 chr6:112721902-112721903(-) m6A 3'UTR       25683224//25412662//24981863//25456834//25569111//22608085 chr6:112721973-112721974(-) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr6:112721996-112721997(-) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr6:112722010-112722011(-) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr6:112722082-112722083(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr6:112722121-112722122(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722128-112722129(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722135-112722136(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722190-112722191(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722204-112722205(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722239-112722240(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722253-112722254(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722270-112722271(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722325-112722326(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:112722527-112722528(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112722569-112722570(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112722584-112722585(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr6:112722778-112722779(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112722806-112722807(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112722904-112722905(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112723028-112723029(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr6:112723109-112723110(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112723142-112723143(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112723147-112723148(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112723156-112723157(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112723188-112723189(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr6:112727246-112727247(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr6:112727447-112727448(-) m6A CDS       25683224//25412662//24981863 chr6:112735887-112735888(-) m6A CDS       25683224//22608085 chr6:112738923-112738924(-) m6A CDS       25683224//22608085 chr6:112738976-112738977(-) m6A CDS       25683224//22608085 chr6:112739086-112739087(-) m6A 3'UTR//CDS       25683224//22608085 chr6:112739414-112739415(-) m6A 3'UTR//CDS       25683224//22608085 chr6:112741407-112741408(-) m6A 3'UTR//CDS       25683224//22608085 chr6:112741415-112741416(-) m6A 3'UTR//CDS       25683224//22608085 chr6:112741430-112741431(-) m6A 3'UTR//CDS       25683224//22608085 chr6:112741488-112741489(-) m6A 3'UTR//CDS       25683224//22608085 chr6:112771386-112771387(-) m6A CDS//exon       25683224//22608085 chr6:112771437-112771438(-) m6A CDS//exon       25683224//22608085 chr6:112771505-112771506(-) m6A CDS//exon       25683224//22608085 chr6:112771523-112771524(-) m6A CDS//exon       25683224//22608085 chr6:112771533-112771534(-) m6A CDS//exon       25683224//22608085 chr6:112771554-112771555(-) m6A CDS//exon       25683224//22608085 chr6:112773665-112773666(-) m6A CDS//exon       25683224//22608085 chr6:112775521-112775522(-) Y CDS//exon       26075521 chr6:112775592-112775593(-) m6A CDS//exon       25683224//22608085 chr6:112775601-112775602(-) m6A CDS//exon       25683224//22608085 chr6:112775644-112775645(-) m6A CDS//exon       25683224//22608085 chr6:112775674-112775675(-) m6A CDS//exon       25683224//22608085 chr6:112777125-112777126(-) m6A CDS//exon       25683224//25412662//24981863 chr6:112780924-112780925(-) m6A CDS//exon       25683224//25412662//24981863 chr6:112780942-112780943(-) m6A CDS//exon       25683224//25412662//24981863 chr6:112780974-112780975(-) m6A CDS//exon       25683224//25412662//24981863 chr6:112781048-112781049(-) m6A CDS//exon       25683224//25412662//22608085 chr6:112795477-112795478(-) m6A exon//intron       25412662 chr6:112795513-112795514(-) m6A exon//intron       25412662 chr6:112816648-112816649(-) m6A CDS//exon       25683224//22608085 chr6:112816678-112816679(-) m6A CDS//exon       25683224//22608085 chr6:112816697-112816698(-) m6A CDS//exon       25683224//22608085 chr6:112816723-112816724(-) m6A CDS//exon       25683224//22608085 chr6:112829555-112829556(-) m6A CDS//exon       25683224//24981863//22608085 chr6:112946467-112946468(-) m6A CDS//exon       25683224//24981863//25569111//26404942 chr6:112946483-112946484(-) m6A CDS//exon       25683224//24981863//25569111//26404942 chr6:112946528-112946529(-) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//26404942 chr6:112946557-112946558(-) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//26404942 chr6:112946605-112946606(-) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//26404942 chr6:112947078-112947079(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr6:112947085-112947086(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr6:112947175-112947176(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr6:112947219-112947220(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Srgap3	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-1-3p
Interactor2: Srgap3

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar