Basic Information:

  VIRBase ID:  

VHID00629490

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-1-3p:  MIMAT0001564          Atp2c1:  NM_001359822     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-1-3p	Atp2c1
miRBase Accession/Entrez ID	MIMAT0001564	235574
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	1700121J11Rik//ATP2//ATP2C1A//AW061228//BCPM//D930003G21Rik//HHD//PM//pmr1//S//SPCA

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Atp2c1	chr9:105412771-105412772(-) m6A 3'UTR//intron       25456834//25412662//24981863//25569111//26404942//22608085 chr9:105412777-105412778(-) m6A 3'UTR//intron       25456834//25412662//24981863//25569111//26404942//22608085 chr9:105412824-105412825(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr9:105412906-105412907(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr9:105412917-105412918(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr9:105412963-105412964(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr9:105412971-105412972(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr9:105413028-105413029(-) m6A 3'UTR//exon//intron       25456834//24981863//25569111//26404942//22608085 chr9:105431565-105431566(-) m6A CDS//exon       22608085 chr9:105432798-105432799(-) m6A CDS//exon       25683224//22608085 chr9:105435058-105435059(-) m6A CDS//exon       25683224//22608085 chr9:105435126-105435127(-) m6A CDS//exon       25683224//22608085 chr9:105439419-105439420(-) m6A CDS//exon       22608085 chr9:105439430-105439431(-) m6A CDS//exon       22608085 chr9:105442820-105442821(-) m6A CDS//exon       22608085 chr9:105451869-105451870(-) m6A CDS//exon       22608085 chr9:105452827-105452828(-) m6A CDS//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Atp2c1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-1-3p
Interactor2: Atp2c1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar