Basic Information:

  VIRBase ID:  

VHID00629223

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-1-3p:  MIMAT0001564          Usp33:  NM_001076676     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-1-3p	Usp33
miRBase Accession/Entrez ID	MIMAT0001564	170822
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	9830169D19Rik//AA409780//Vdu//Vdu1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Usp33	chr3:152048126(+) A-I      intronic chr3:152019715(+) A-I      intronic chr3:152048110(+) A-I      intronic chr3:152048120(+) A-I      intronic chr3:152019710(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Usp33	chr3:152356746(+) A-I intron -    22524474 chr3:152356751(+) A-I intron -    22524474 chr3:152385146(+) A-I intron -    22524474 chr3:152385156(+) A-I intron -    22524474 chr3:152385162(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Usp33	chr3:152346499-152346500(+) m6A 5'UTR       25412662//25569111 chr3:152346570-152346571(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr3:152357879-152357880(+) m6A 5'UTR//exon       24981863//25569111//22608085 chr3:152360375-152360376(+) m6A 3'UTR//CDS       22608085 chr3:152360401-152360402(+) m6A 3'UTR//CDS       22608085 chr3:152360414-152360415(+) m6A 3'UTR//CDS       22608085 chr3:152360424-152360425(+) m6A 3'UTR//CDS       22608085 chr3:152367134-152367135(+) m6A exon//intron       25412662 chr3:152368266-152368267(+) m6A 3'UTR//CDS//exon       25456834//25412662//24981863//25569111//22608085 chr3:152368322-152368323(+) m6A 3'UTR//CDS//exon       25456834//25412662//24981863//25569111//22608085 chr3:152368449-152368450(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368460-152368461(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368506-152368507(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368561-152368562(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368566-152368567(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368572-152368573(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368578-152368579(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368592-152368593(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368605-152368606(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368616-152368617(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr3:152368796-152368797(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr3:152368809-152368810(+) m6A CDS//intron       25683224//24981863//25456834//25569111//22608085 chr3:152370394-152370395(+) m6A 3'UTR//CDS//exon       25683224//24981863 chr3:152370460-152370461(+) m6A 3'UTR//intron       24981863//22608085 chr3:152392214-152392215(+) m6A CDS//exon       - chr3:152392351-152392352(+) m6A CDS//exon       24981863 chr3:152392374-152392375(+) m6A 3'UTR//exon       24981863 chr3:152392425-152392426(+) m6A 3'UTR//exon       24981863//26404942 chr3:152393250-152393251(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Usp33	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-1-3p
Interactor2: Usp33

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar