Detail Information

Basic Information:


  VIRBase ID:  

VHID00627734

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-3p:           Nr1d2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-2-3p Nr1d2
miRBase
Accession/Entrez ID		 MIMAT0005561 353187
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - Rev-erb//RVR

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Nr1d2
chr14:19039764(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Nr1d2
chr14:18207250(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Nr1d2
chr14:18205443-18205444(-) Y 3'UTR//exon       26075521
chr14:18205774-18205775(-) Y 3'UTR//exon       26075521
chr14:18206283-18206284(-) m6A 3'UTR       25683224//24981863//25456834
chr14:18206303-18206304(-) m6A 3'UTR       25683224//24981863//25456834//22608085
chr14:18206343-18206344(-) m6A 3'UTR       25683224//24981863//25456834//22608085
chr14:18206349-18206350(-) m6A 3'UTR       25683224//24981863//25456834//22608085
chr14:18206428-18206429(-) m6A 3'UTR       25683224//24981863
chr14:18206470-18206471(-) m6A 3'UTR       25683224//24981863
chr14:18206494-18206495(-) m6A 3'UTR       25683224//24981863
chr14:18206518-18206519(-) m6A 3'UTR       25683224//24981863
chr14:18206535-18206536(-) m6A 3'UTR       25683224//24981863
chr14:18206595-18206596(-) m6A 3'UTR       25683224//24981863//25456834
chr14:18206668-18206669(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr14:18206674-18206675(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr14:18206711-18206712(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr14:18206730-18206731(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr14:18206796-18206797(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr14:18206812-18206813(-) m6A CDS       25456834//24981863//25569111//22608085
chr14:18206833-18206834(-) m6A CDS       25456834//24981863//25569111//22608085
chr14:18211916-18211917(-) m6A CDS       25683224//24981863
chr14:18211932-18211933(-) m6A CDS       25683224//24981863
chr14:18214916-18214917(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18214923-18214924(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18214985-18214986(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18214996-18214997(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215042-18215043(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215059-18215060(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215123-18215124(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215150-18215151(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215198-18215199(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215209-18215210(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr14:18215291-18215292(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr14:18215300-18215301(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr14:18215335-18215336(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr14:18215368-18215369(-) m6A CDS//exon       25683224//24981863//25569111
chr14:18215411-18215412(-) m6A CDS//exon       24981863//25569111
chr14:18215421-18215422(-) m6A CDS//exon       24981863//25569111
chr14:18215458-18215459(-) m6A CDS//exon       24981863//25569111
chr14:18216705-18216706(-) m6A CDS//exon       22608085
chr14:18216711-18216712(-) m6A CDS//exon       22608085
chr14:18216732-18216733(-) m6A CDS//exon       22608085
chr14:18216765-18216766(-) m6A CDS//exon       22608085
chr14:18238955-18238956(-) m6A 5'UTR//exon       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Nr1d2
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-2-3p
Interactor2: Nr1d2

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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