Basic Information:

  VIRBase ID:  

VHID00627085

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-3p:  MIMAT0005561          Rab11fip1:  NM_001080813     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-3p	Rab11fip1
miRBase Accession/Entrez ID	MIMAT0005561	75767
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2010200K21Rik//4833414G05Rik//Rcp

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rab11fip1	chr8:27138808-27138809(-) m6A 3'UTR       24981863 chr8:27138816-27138817(-) m6A 3'UTR       24981863 chr8:27138825-27138826(-) m6A 3'UTR       24981863 chr8:27138962-27138963(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27138969-27138970(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27139121-27139122(-) m6A 3'UTR       24981863 chr8:27139524-27139525(-) m6A 3'UTR       25683224//24981863 chr8:27139558-27139559(-) m6A 3'UTR       25683224//24981863 chr8:27139773-27139774(-) m6A 3'UTR       25683224 chr8:27140085-27140086(-) m6A 3'UTR       25683224//24981863 chr8:27140099-27140100(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27140371-27140372(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27140490-27140491(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr8:27140534-27140535(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27140551-27140552(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27140598-27140599(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27140633-27140634(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27142254-27142255(-) m6A 3'UTR       24981863 chr8:27142279-27142280(-) m6A 3'UTR       24981863 chr8:27142289-27142290(-) m6A 3'UTR       24981863 chr8:27142308-27142309(-) m6A 3'UTR       24981863 chr8:27142673-27142674(-) m6A 3'UTR       25683224//24981863//25569111 chr8:27142767-27142768(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27142775-27142776(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27142860-27142861(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr8:27143059-27143060(-) m6A 3'UTR       25456834//24981863//25569111 chr8:27143174-27143175(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27143231-27143232(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111 chr8:27143269-27143270(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111 chr8:27143309-27143310(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111 chr8:27143319-27143320(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111 chr8:27149041-27149042(-) m6A CDS//intron       25683224//24981863//25569111 chr8:27149051-27149052(-) m6A CDS//intron       25683224//24981863//25569111 chr8:27150719-27150720(-) m6A CDS       25683224//24981863 chr8:27150741-27150742(-) m6A CDS       25683224//24981863 chr8:27150755-27150756(-) m6A CDS       25683224//24981863 chr8:27150779-27150780(-) m6A CDS       25683224//24981863 chr8:27151736-27151737(-) m6A CDS//intron       25683224//24981863//25569111 chr8:27151813-27151814(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr8:27151845-27151846(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr8:27152393-27152394(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152399-27152400(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152496-27152497(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr8:27152519-27152520(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr8:27152527-27152528(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr8:27152549-27152550(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152618-27152619(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152746-27152747(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152784-27152785(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152831-27152832(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr8:27152865-27152866(-) m6A CDS//exon//intron       24981863//25569111 chr8:27152912-27152913(-) m6A CDS//exon//intron       24981863//25569111 chr8:27153031-27153032(-) m6A CDS//exon//intron       24981863 chr8:27154164-27154165(-) m6A CDS//exon       25683224//24981863 chr8:27154195-27154196(-) m6A CDS//exon       25683224//24981863 chr8:27154201-27154202(-) m6A CDS//exon       25683224//24981863 chr8:27154232-27154233(-) m6A CDS//exon       25683224//25412662//24981863 chr8:27154259-27154260(-) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:27154322-27154323(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr8:27154396-27154397(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr8:27154474-27154475(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr8:27154484-27154485(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27154491-27154492(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27154538-27154539(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr8:27154648-27154649(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:27154673-27154674(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:27154787-27154788(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27154892-27154893(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27154904-27154905(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27154917-27154918(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27156285-27156286(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27156309-27156310(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27156385-27156386(-) m6A CDS       25683224//25412662//24981863 chr8:27156411-27156412(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:27156492-27156493(-) m6A CDS       25683224//24981863//25412662//25569111 chr8:27156516-27156517(-) m6A CDS       25683224//24981863//25412662//25569111 chr8:27156524-27156525(-) m6A CDS       25683224//24981863//25412662//25569111 chr8:27156549-27156550(-) m6A CDS       25683224//24981863//25412662//25569111 chr8:27156633-27156634(-) m6A CDS       25683224//24981863//25412662 chr8:27156647-27156648(-) m6A CDS       25683224//25412662//24981863 chr8:27161904-27161905(-) m6A exon//intron       25683224//25412662//24981863 chr8:27161927-27161928(-) m6A exon//intron       25683224//25412662//24981863 chr8:27161956-27161957(-) m6A exon//intron       25683224//25412662//24981863 chr8:27167015-27167016(-) m6A exon//intron       24981863 chr8:27174229-27174230(-) m6A CDS//exon       25412662//24981863 chr8:27174250-27174251(-) m6A CDS//exon       25412662//24981863 chr8:27174483-27174484(-) m6A CDS//exon       25412662//24981863 chr8:27174548-27174549(-) m6A CDS//exon       25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rab11fip1	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-3p
Interactor2: Rab11fip1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar