Basic Information:

  VIRBase ID:  

VHID00626709

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-3p:  MIMAT0005561          Gpatch11:  NM_181649     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-3p	Gpatch11
miRBase Accession/Entrez ID	MIMAT0005561	53951
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2310002B06Rik//C80922//Ccdc75//L26697

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gpatch11	chr17:78836795-78836796(+) m6A 5'UTR       24981863//25569111 chr17:78836809-78836810(+) m6A 5'UTR       25569111 chr17:78836832-78836833(+) m6A 5'UTR       25569111 chr17:78836882-78836883(+) m6A 5'UTR       25569111 chr17:78839150-78839151(+) m6A CDS       24981863 chr17:78840093-78840094(+) m6A CDS       24981863 chr17:78840115-78840116(+) m6A CDS       24981863 chr17:78841022-78841023(+) m6A CDS       24981863//25412662 chr17:78841049-78841050(+) m6A CDS       24981863//25412662 chr17:78841262-78841263(+) m6A CDS       25412662//24981863 chr17:78842163-78842164(+) m6A CDS       25412662//24981863 chr17:78842192-78842193(+) m6A CDS       25412662//24981863 chr17:78843887-78843888(+) m6A CDS       25412662//24981863 chr17:78845152-78845153(+) m6A CDS       25412662 chr17:78845174-78845175(+) m6A CDS       25412662 chr17:78845294-78845295(+) m6A 3'UTR       24981863//22608085 chr17:78845349-78845350(+) m6A 3'UTR       24981863//25569111//22608085 chr17:78845355-78845356(+) m6A 3'UTR       24981863//25569111//22608085 chr17:78845957-78845958(+) m6A 3'UTR       25569111 chr17:78845967-78845968(+) m6A 3'UTR       24981863//25569111 chr17:78845998-78845999(+) m6A 3'UTR       24981863//25569111 chr17:78846008-78846009(+) Y 3'UTR//exon       26075521 chr17:78846036-78846037(+) m6A 3'UTR       24981863//25569111 chr17:78846126-78846127(+) m6A 3'UTR       25569111 chr17:78846592-78846593(+) m6A 3'UTR       24981863//25569111//22608085 chr17:78846601-78846602(+) m6A 3'UTR       24981863//25569111//22608085 chr17:78846638-78846639(+) m6A 3'UTR       24981863//25569111//22608085 chr17:78846680-78846681(+) m6A 3'UTR       24981863//25569111//22608085 chr17:78846709-78846710(+) m6A 3'UTR       24981863//22608085 chr17:78846759-78846760(+) m6A 3'UTR       24981863//22608085 chr17:78846770-78846771(+) m6A 3'UTR       24981863//22608085 chr17:78846811-78846812(+) m6A 3'UTR       24981863//22608085 chr17:78846845-78846846(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Gpatch11	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-3p
Interactor2: Gpatch11

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar