Basic Information:

  VIRBase ID:  

VHID00626531

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-3p:  MIMAT0005561          Scd2:  NM_009128     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-3p	Scd2
miRBase Accession/Entrez ID	MIMAT0005561	20250
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	mir-5114//Mir5114//Scd-//Scd-2//swty

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Scd2	chr19:44293858-44293859(+) m6A 5'UTR       25412662 chr19:44293934-44293935(+) m6A 5'UTR       25412662 chr19:44294062-44294063(+) m6A 5'UTR       25683224//24981863//25569111 chr19:44294101-44294102(+) m6A 5'UTR       25683224//24981863//25569111 chr19:44294221-44294222(+) m6A 5'UTR       25683224//24981863//25569111//26404942 chr19:44294238-44294239(+) m6A 5'UTR       25683224//24981863//25569111//26404942 chr19:44294298-44294299(+) m6A 5'UTR       25683224//24981863//25569111//26404942//22608085 chr19:44294956-44294957(+) m6A CDS       25683224//25569111//22608085 chr19:44295022-44295023(+) m6A CDS       25683224//24981863//25569111//22608085 chr19:44295099-44295100(+) m6A CDS       25683224//25569111//22608085 chr19:44298107-44298108(+) m6A CDS       25683224//22608085 chr19:44299662-44299663(+) m6A CDS       25683224//22608085 chr19:44299733-44299734(+) m6A CDS       25683224//22608085 chr19:44299763-44299764(+) m6A CDS       25683224//22608085 chr19:44299768-44299769(+) m6A CDS       25683224//22608085 chr19:44301284-44301285(+) m6A CDS       25683224//25412662//25569111//22608085 chr19:44301294-44301295(+) m6A CDS       25412662//25569111//22608085 chr19:44301357-44301358(+) m6A CDS       25412662//24981863//25569111//22608085 chr19:44301399-44301400(+) m6A CDS       24981863//25569111//22608085 chr19:44301417-44301418(+) m6A CDS       24981863//25569111//22608085 chr19:44303170-44303171(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr19:44303340-44303341(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr19:44303766-44303767(+) m6A 3'UTR       26404942//22608085 chr19:44303955-44303956(+) m6A 3'UTR       25683224//26404942//22608085 chr19:44304012-44304013(+) m6A 3'UTR       25683224//26404942//22608085 chr19:44304053-44304054(+) m6A 3'UTR       25683224//26404942//22608085 chr19:44304114-44304115(+) m6A 3'UTR       25683224//26404942//22608085 chr19:44304136-44304137(+) m6A 3'UTR       25683224//26404942//22608085 chr19:44304151-44304152(+) m6A 3'UTR       25683224//26404942//22608085 chr19:44304167-44304168(+) m6A 3'UTR       25683224//22608085 chr19:44304354-44304355(+) m6A 3'UTR       24981863//26404942//22608085 chr19:44304372-44304373(+) m6A 3'UTR       24981863//26404942//22608085 chr19:44304409-44304410(+) m6A 3'UTR       24981863//26404942//22608085 chr19:44305010-44305011(+) Y 3'UTR//exon       26075521 chr19:44305015-44305016(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44305034-44305035(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44305056-44305057(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr19:44305097-44305098(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr19:44305355-44305356(+) m6A 3'UTR       25683224//22608085 chr19:44305555-44305556(+) m6A 3'UTR       25569111//22608085 chr19:44305608-44305609(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44305626-44305627(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44305675-44305676(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085 chr19:44305704-44305705(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085 chr19:44305728-44305729(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr19:44305774-44305775(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr19:44305883-44305884(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr19:44305915-44305916(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr19:44305941-44305942(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr19:44305969-44305970(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:44305983-44305984(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:44306346-44306347(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44306404-44306405(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44306414-44306415(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44306467-44306468(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44306533-44306534(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr19:44306601-44306602(+) m6A 3'UTR       26404942//22608085 chr19:44306699-44306700(+) m6A 3'UTR       25569111//22608085 chr19:44306708-44306709(+) m6A 3'UTR       25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Scd2	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-3p
Interactor2: Scd2

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar