Basic Information:

  VIRBase ID:  

VHID00626454

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-3p:  MIMAT0005561          Ncoa3:  NM_001374779     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-3p	Ncoa3
miRBase Accession/Entrez ID	MIMAT0005561	17979
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2010305B15Rik//Actr//AI//Aib1//AW321064//bHLHe4//bHLHe42//KAT13//KAT13B//p//p/Cip//pCip//RA//Rac3//Sr//Src3//TRA//TRAM//Tram-1//Tram1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ncoa3	chr2:165992730-165992731(+) m6A 5'UTR       25412662//24981863//25569111 chr2:166034902-166034903(+) m6A 5'UTR       25412662//24981863//25569111 chr2:166034909-166034910(+) m6A 5'UTR       25412662//24981863//25569111 chr2:166047482-166047483(+) m6A CDS       25412662//25569111 chr2:166047533-166047534(+) m6A CDS       25569111//22608085 chr2:166047554-166047555(+) m6A CDS       25569111//22608085 chr2:166047934-166047935(+) Y CDS//exon       26075521 chr2:166050105-166050106(+) m6A CDS//exon       - chr2:166050159-166050160(+) m6A CDS//exon       22608085 chr2:166050201-166050202(+) m6A CDS//exon       22608085 chr2:166050220-166050221(+) m6A CDS//exon       22608085 chr2:166051328-166051329(+) m6A CDS//exon       22608085 chr2:166051338-166051339(+) m6A CDS//exon       22608085 chr2:166051345-166051346(+) m6A CDS//exon       22608085 chr2:166051385-166051386(+) m6A CDS//exon       22608085 chr2:166051424-166051425(+) m6A CDS//exon       - chr2:166054415-166054416(+) m6A CDS       25412662//25569111 chr2:166054488-166054489(+) m6A CDS       25412662//25569111 chr2:166054520-166054521(+) m6A CDS       25412662//25569111 chr2:166054589-166054590(+) m6A CDS       25412662//25569111 chr2:166054789-166054790(+) m6A CDS       25569111 chr2:166054868-166054869(+) m6A CDS       25456834//24981863//25569111 chr2:166054906-166054907(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:166054962-166054963(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166054993-166054994(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055028-166055029(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055098-166055099(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055125-166055126(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055199-166055200(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055208-166055209(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055261-166055262(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055308-166055309(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055391-166055392(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055423-166055424(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055456-166055457(+) m1A CDS       26863196 chr2:166055490-166055491(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055550-166055551(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055557-166055558(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055607-166055608(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166055621-166055622(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:166057098-166057099(+) m6A CDS       25456834//25412662//24981863//25569111 chr2:166057186-166057187(+) m6A CDS       24981863//25569111 chr2:166057204-166057205(+) m6A CDS       25569111 chr2:166058771-166058772(+) m6A CDS       25569111 chr2:166060770-166060771(+) m6A CDS       25683224//22608085 chr2:166060839-166060840(+) m6A CDS//exon       25683224//24981863//25569111 chr2:166065759-166065760(+) m6A CDS//exon       25683224//24981863//25569111 chr2:166065777-166065778(+) m6A CDS//exon       25683224//24981863//25569111 chr2:166065840-166065841(+) m6A CDS//exon       25683224//24981863//25569111 chr2:166065894-166065895(+) m6A CDS//exon       25683224//24981863//25456834//25569111 chr2:166065987-166065988(+) m6A CDS//exon       24981863//25569111 chr2:166065994-166065995(+) m6A CDS//exon       24981863//25569111 chr2:166066056-166066057(+) m6A exon//intron       25569111 chr2:166069845-166069846(+) m6A CDS//exon       25569111//22608085 chr2:166069875-166069876(+) m6A CDS//exon       25569111//22608085 chr2:166069897-166069898(+) m6A CDS//exon       25412662//25569111 chr2:166070158-166070159(+) m6A 3'UTR//exon       25412662//25569111 chr2:166070790-166070791(+) m6A 3'UTR       25456834//24981863//25569111 chr2:166070828-166070829(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr2:166070834-166070835(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr2:166070923-166070924(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:166070932-166070933(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:166070984-166070985(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:166072016-166072017(+) m6A 3'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Ncoa3	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-3p
Interactor2: Ncoa3

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar