Basic Information:

  VIRBase ID:  

VHID00626169

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.1:  MIMAT0005560          Syndig1:  NM_001363095     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.1	Syndig1
miRBase Accession/Entrez ID	MIMAT0005560	433485
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AW123113//DSPC2//Gm14134//H2C20orf39//SynD//Tmem90b

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Syndig1	chr2:149830957-149830958(+) m6A 5'UTR//intron       25569111 chr2:149899583-149899584(+) m6A CDS       25456834//24981863//22608085 chr2:149899718-149899719(+) m6A CDS       25456834//24981863//22608085 chr2:149899724-149899725(+) m6A CDS       25456834//24981863//22608085 chr2:149899831-149899832(+) m6A CDS       24981863//22608085 chr2:149899847-149899848(+) m6A CDS       24981863//22608085 chr2:149899865-149899866(+) m6A CDS       24981863//22608085 chr2:150003180-150003181(+) m6A CDS       22608085 chr2:150003201-150003202(+) m6A CDS       22608085 chr2:150003269-150003270(+) m6A CDS       25456834//24981863//22608085 chr2:150003321-150003322(+) m6A CDS       25456834//24981863//22608085 chr2:150003397-150003398(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150003435-150003436(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150003644-150003645(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150003670-150003671(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150003727-150003728(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150003800-150003801(+) m6A 3'UTR       24981863//25456834//22608085 chr2:150004036-150004037(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150004085-150004086(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150004109-150004110(+) m6A 3'UTR       25456834//24981863//22608085 chr2:150004128-150004129(+) m6A 3'UTR       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Syndig1	Soma Cerebellar Purkinje cells     18184812

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.1
Interactor2: Syndig1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar