Basic Information:

  VIRBase ID:  

VHID00626152

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.1:  MIMAT0005560          Cnep1r1:  NM_029074     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.1	Cnep1r1
miRBase Accession/Entrez ID	MIMAT0005560	382030
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5033428A16Rik//NEP1-R1//Tmem188

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Cnep1r1	chr8:90656448(+) A-I      intronic chr8:90655941(+) A-I      intronic chr8:90644911(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Cnep1r1	chr8:88118808-88118809(+) m6A 5'UTR//exon       24981863//25569111 chr8:88118848-88118849(+) m6A CDS//exon       24981863//25569111 chr8:88118858-88118859(+) m6A CDS//exon       24981863//25569111 chr8:88119801-88119802(+) m6A CDS//exon       25569111 chr8:88125126-88125127(+) m6A CDS//exon//intron       25569111 chr8:88125146-88125147(+) m6A CDS//exon//intron       25569111 chr8:88129719-88129720(+) m6A CDS//exon       25569111 chr8:88129961-88129962(+) m6A 3'UTR//exon//intron       25569111 chr8:88130046-88130047(+) m6A 3'UTR//exon//intron       25569111 chr8:88130076-88130077(+) m6A 3'UTR//exon//intron       25569111 chr8:88130098-88130099(+) m6A 3'UTR//exon//intron       25569111 chr8:88130895-88130896(+) m6A 3'UTR//intron       24981863//25456834//25569111 chr8:88130938-88130939(+) m6A 3'UTR//intron       24981863//25456834//25569111 chr8:88130955-88130956(+) m6A 3'UTR//intron       24981863//25456834//25569111 chr8:88133851-88133852(+) m6A 3'UTR//exon       25569111 chr8:88133857-88133858(+) m6A 3'UTR//exon       25456834//24981863//25569111 chr8:88133919-88133920(+) m6A 3'UTR//exon       25456834//25412662//24981863//25569111 chr8:88134069-88134070(+) m6A 3'UTR//exon       25456834//25412662//24981863//25569111 chr8:88134106-88134107(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:88134114-88134115(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:88134119-88134120(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:88134152-88134153(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr8:88134186-88134187(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085//22575960 chr8:88134206-88134207(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085//22575960 chr8:88134236-88134237(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085 chr8:88134268-88134269(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085 chr8:88134324-88134325(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085 chr8:88134345-88134346(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Cnep1r1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.1
Interactor2: Cnep1r1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar