Detail Information

Basic Information:


  VIRBase ID:  

VHID00625928

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.1:           Tiprl:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-2-5p.1 Tiprl
miRBase
Accession/Entrez ID		 MIMAT0005560 226591
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1810011K17Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Tiprl
chr1:167161347(-) A-I      intronic
chr1:167161351(-) A-I      intronic
chr1:167161344(-) A-I      intronic
chr1:167161333(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Tiprl
chr1:165231202(-) A-I intron -    22524474
chr1:165231213(-) A-I intron -    22524474
chr1:165231216(-) A-I intron -    22524474
chr1:165231220(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Tiprl
chr1:165214043-165214044(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr1:165214049-165214050(-) m6A 3'UTR       25456834//24981863//25569111
chr1:165214093-165214094(-) m6A 3'UTR       25456834//24981863//25569111
chr1:165214116-165214117(-) m6A 3'UTR       25456834//24981863
chr1:165215401-165215402(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr1:165215484-165215485(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr1:165215695-165215696(-) m6A 3'UTR//exon       25456834//24981863//25569111//26404942//22608085
chr1:165215707-165215708(-) m6A 3'UTR//exon       25456834//24981863//25569111//26404942//22608085
chr1:165215723-165215724(-) m6A 3'UTR//exon       25456834//24981863//25569111//26404942//22608085
chr1:165215764-165215765(-) m6A 3'UTR//CDS//exon       25456834//24981863//25569111//26404942//22608085
chr1:165215853-165215854(-) m6A 3'UTR//CDS//exon       25456834//24981863//25569111//22608085
chr1:165216507-165216508(-) m6A exon//intron       24981863
chr1:165217835-165217836(-) m6A 3'UTR//CDS       25569111
chr1:165227557-165227558(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr1:165227570-165227571(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr1:165236463-165236464(-) m6A 5'UTR//intron       25683224
chr1:165236474-165236475(-) m6A 5'UTR//intron       25683224
chr1:165236497-165236498(-) m6A 5'UTR//intron       25683224
chr1:165236760-165236761(-) m6A CDS//exon       25412662//24981863//25569111
chr1:165236798-165236799(-) m6A CDS//exon       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Tiprl
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-2-5p.1
Interactor2: Tiprl

Evidence Support:


Prediction-Evidence Rep
Support Database RepTar

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