Basic Information:

  VIRBase ID:  

VHID00625503

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.1:  MIMAT0005560          Ttc39b:  NM_027238     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.1	Ttc39b
miRBase Accession/Entrez ID	MIMAT0005560	69863
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	1810054D07Rik//9130422G05Rik//AI450603//AV103077//AW215585

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ttc39b	chr4:83222546-83222547(-) m6A 3'UTR       24981863//22608085 chr4:83222565-83222566(-) m6A 3'UTR       24981863//22608085 chr4:83222596-83222597(-) m6A 3'UTR       24981863//22608085 chr4:83226874-83226875(-) m6A 3'UTR//exon       25569111 chr4:83227030-83227031(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr4:83227053-83227054(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960 chr4:83227126-83227127(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960 chr4:83227137-83227138(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr4:83227148-83227149(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr4:83230414-83230415(-) m6A CDS//exon       25456834//24981863//25569111 chr4:83271206-83271207(-) m6A 5'UTR//CDS       25412662 chr4:83279305-83279306(-) m6A 5'UTR//intron       25412662 chr4:83297937-83297938(-) m6A CDS       25683224//24981863//25569111 chr4:83324113-83324114(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr4:83324176-83324177(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr4:83324234-83324235(-) m6A 5'UTR       25412662//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Ttc39b	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.1
Interactor2: Ttc39b

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar