Basic Information:

  VIRBase ID:  

VHID00624951

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.1:  MIMAT0005560          Gna13:  NM_001359034     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.1	Gna13
miRBase Accession/Entrez ID	MIMAT0005560	14674
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AU024132//AU043124//Galp//Galpha13

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gna13	chr11:109362980-109362981(+) m6A CDS       25412662//24981863//25569111 chr11:109363099-109363100(+) m6A CDS       25683224//25412662//24981863//25569111 chr11:109363196-109363197(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr11:109365595-109365596(+) m6A CDS       25569111//22608085 chr11:109365610-109365611(+) m6A CDS       25569111//22608085 chr11:109365666-109365667(+) m6A CDS       25569111 chr11:109365715-109365716(+) m6A CDS       25569111 chr11:109380220-109380221(+) m6A CDS//intron       25569111 chr11:109380261-109380262(+) m6A 3'UTR//intron       25569111 chr11:109380268-109380269(+) m6A 3'UTR//intron       25569111 chr11:109380360-109380361(+) m6A 3'UTR//intron       25569111 chr11:109380382-109380383(+) m6A 3'UTR//intron       25569111 chr11:109392383-109392384(+) m6A CDS       24981863//25569111 chr11:109396127-109396128(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396135-109396136(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396160-109396161(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396171-109396172(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396223-109396224(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396228-109396229(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396271-109396272(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396295-109396296(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396358-109396359(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:109396412-109396413(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr11:109396442-109396443(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr11:109396493-109396494(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr11:109396618-109396619(+) m6A 3'UTR       25569111 chr11:109396829-109396830(+) m6A 3'UTR       25569111//22608085 chr11:109397298-109397299(+) m6A 3'UTR       24981863//25569111 chr11:109397348-109397349(+) m6A 3'UTR       25683224//24981863//25569111 chr11:109397370-109397371(+) m6A 3'UTR       25683224//24981863//25569111 chr11:109397425-109397426(+) m6A 3'UTR       25683224//24981863//25569111 chr11:109397486-109397487(+) m6A 3'UTR       25569111 chr11:109397803-109397804(+) m6A 3'UTR       25683224//22608085 chr11:109397842-109397843(+) m6A 3'UTR       25683224//22608085 chr11:109397940-109397941(+) m6A 3'UTR       25683224//22608085 chr11:109398550-109398551(+) m6A 3'UTR       25683224//22608085 chr11:109398620-109398621(+) m6A 3'UTR       25683224 chr11:109398629-109398630(+) m6A 3'UTR       25683224 chr11:109400994-109400995(+) m6A 3'UTR       24981863//22608085 chr11:109401020-109401021(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Gna13	Exosome Mast cells     17486113 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.1
Interactor2: Gna13

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar