Basic Information:

  VIRBase ID:  

VHID00624763

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.2:  MIMAT0005559          Depdc5:  NM_001025426     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.2	Depdc5
miRBase Accession/Entrez ID	MIMAT0005559	277854
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AV016528

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Depdc5	chr5:33335247(+) A-I      3'UTR chr5:33334876(+) A-I      3'UTR chr5:33334834(+) A-I      3'UTR chr5:33335248(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Depdc5	chr5:32992598(+) A-I intron -    22524474 chr5:32992599(+) A-I intron -    22524474   //16940548 chr5:32992185(+) A-I intron -    16940548 chr5:32992227(+) A-I intron -    16940548

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Depdc5	chr5:32863806-32863807(+) m6A 5'UTR//exon//intron       25683224 chr5:32864027-32864028(+) m6A 5'UTR//exon//intron       25683224 chr5:32864056-32864057(+) m6A 5'UTR//exon//intron       25683224 chr5:32864125-32864126(+) m6A 5'UTR//exon//intron       25683224 chr5:32875327-32875328(+) m6A CDS//exon       25683224//22608085 chr5:32875359-32875360(+) m6A CDS//exon       25683224//22608085 chr5:32887042-32887043(+) m6A CDS//exon//intron       25683224//22608085 chr5:32924173-32924174(+) m6A 3'UTR//CDS//exon       25412662//24981863//22608085 chr5:32924183-32924184(+) m6A CDS//exon       25412662//24981863//22608085 chr5:32937634-32937635(+) m6A CDS//exon       24981863//22608085 chr5:32937694-32937695(+) m6A CDS//exon       24981863//22608085 chr5:32937700-32937701(+) m6A CDS//exon       24981863//22608085 chr5:32938244-32938245(+) m6A CDS//exon       24981863//22608085 chr5:32938252-32938253(+) m6A CDS//exon       24981863//22608085 chr5:32945128-32945129(+) m6A CDS//exon       25412662//22608085 chr5:32946639-32946640(+) m6A CDS//exon       25412662//22608085 chr5:32946723-32946724(+) m6A CDS//exon       25412662//22608085 chr5:32955864-32955865(+) m6A CDS//exon       25412662//22608085 chr5:32955911-32955912(+) m6A CDS//exon       25412662//22608085 chr5:32979407-32979408(+) m6A 3'UTR//CDS       25683224//22608085 chr5:32979432-32979433(+) m6A 3'UTR//CDS       25683224//22608085 chr5:32979444-32979445(+) m6A 3'UTR//CDS       25683224//22608085 chr5:32979480-32979481(+) m6A 3'UTR//CDS       25683224//22608085 chr5:32991004-32991005(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:32991028-32991029(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:32991087-32991088(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:32991142-32991143(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:32991192-32991193(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.2
Interactor2: Depdc5

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar