Basic Information:

  VIRBase ID:  

VHID00624696

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.2:  MIMAT0005559          Ppp1r12c:  NM_029834     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.2	Ppp1r12c
miRBase Accession/Entrez ID	MIMAT0005559	232807
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2410197A17Rik//AI839747//B430101M08//Mbs8//Mbs85

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Ppp1r12c	chr7:4445386(-) A-I      intronic chr7:4445383(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Ppp1r12c	chr7:4493781(-) A-I intron -    22524474 chr7:4493784(-) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ppp1r12c	chr7:4481794-4481795(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:4481802-4481803(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:4481820-4481821(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:4481838-4481839(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:4481901-4481902(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:4481911-4481912(-) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:4481940-4481941(-) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr7:4481948-4481949(-) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr7:4482001-4482002(-) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:4482083-4482084(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111 chr7:4482390-4482391(-) m6A CDS//exon//intron       25683224//25412662//24981863//25569111 chr7:4482633-4482634(-) m6A CDS//exon//intron       25683224//25412662 chr7:4482845-4482846(-) m6A CDS//intron       25683224//25412662//24981863 chr7:4483159-4483160(-) m6A CDS//exon       25683224//25412662//24981863 chr7:4483386-4483387(-) m6A CDS//exon       25683224//25412662//24981863//22608085 chr7:4483540-4483541(-) m6A CDS//exon       25683224//25412662//24981863//22608085 chr7:4483623-4483624(-) m6A exon//intron       25683224//25412662//22608085 chr7:4483949-4483950(-) m6A CDS//exon       25683224//22608085 chr7:4484553-4484554(-) m6A exon//intron       25412662 chr7:4484725-4484726(-) m6A CDS//exon       25412662//22608085 chr7:4485067-4485068(-) m6A CDS//exon       25412662//22608085 chr7:4485339-4485340(-) m6A exon//intron       25412662//22608085 chr7:4485345-4485346(-) m6A exon//intron       25412662//22608085 chr7:4485454-4485455(-) m6A CDS//exon       25412662//22608085 chr7:4486366-4486367(-) m6A CDS//exon       25412662//22608085 chr7:4486378-4486379(-) m6A CDS//exon       25412662//22608085 chr7:4486391-4486392(-) m6A CDS//exon       25412662//22608085 chr7:4486602-4486603(-) m6A CDS//exon       25412662//22608085 chr7:4486675-4486676(-) m6A exon//intron       25412662//22608085 chr7:4486722-4486723(-) m6A exon//intron       25412662 chr7:4489296-4489297(-) m6A exon//intron       25569111 chr7:4489368-4489369(-) m6A exon//intron       25569111 chr7:4489642-4489643(-) m6A exon//intron       25683224 chr7:4489653-4489654(-) m6A exon//intron       25683224 chr7:4489787-4489788(-) m6A CDS//exon       25683224//25412662//22608085 chr7:4497272-4497273(-) m6A 3'UTR//CDS//exon       25412662//22608085 chr7:4497284-4497285(-) m6A 3'UTR//CDS//exon       25412662//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Ppp1r12c	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.2
Interactor2: Ppp1r12c

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar