Basic Information:

  VIRBase ID:  

VHID00624386

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-2-5p.2:  MIMAT0005559          Ccar1:  NM_026201     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-2-5p.2	Ccar1
miRBase Accession/Entrez ID	MIMAT0005559	67500
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2610511G16Rik//9430036H15Rik//Ca//Carp1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Ccar1	chr10:62230687(-) A-I      intronic chr10:62251845(-) A-I      intronic chr10:62230670(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Ccar1	chr10:62767922(-) A-I intron -    22524474 chr10:62767939(-) A-I intron -    22524474 chr10:62789097(-) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ccar1	chr10:62744146-62744147(-) m6A 3'UTR       25412662//24981863 chr10:62744172-62744173(-) m6A 3'UTR       25412662//24981863 chr10:62744195-62744196(-) m6A 3'UTR       25412662 chr10:62744209-62744210(-) m6A 3'UTR       25412662 chr10:62744280-62744281(-) m6A 3'UTR       25412662 chr10:62744719-62744720(-) m6A 3'UTR       24981863 chr10:62744802-62744803(-) m6A CDS       24981863 chr10:62745305-62745306(-) m6A CDS       24981863//25456834//25569111 chr10:62745315-62745316(-) m6A CDS       24981863//25456834//25569111 chr10:62745329-62745330(-) m6A CDS       24981863//25456834//25569111 chr10:62745350-62745351(-) m6A CDS       24981863//25456834//25569111 chr10:62745368-62745369(-) m6A CDS       24981863//25456834//25569111//26404942 chr10:62745389-62745390(-) m6A CDS       24981863//25456834//25569111//26404942 chr10:62745409-62745410(-) m6A CDS       24981863//25456834//25569111//26404942 chr10:62745434-62745435(-) m6A CDS       24981863//25456834//25569111//26404942 chr10:62745443-62745444(-) m6A CDS       24981863//25456834//25569111//26404942 chr10:62745453-62745454(-) m6A CDS       24981863//25456834//25569111//26404942 chr10:62746903-62746904(-) m6A CDS       24981863//25456834//25569111 chr10:62746931-62746932(-) m6A CDS       24981863//25456834//25569111 chr10:62746967-62746968(-) m6A CDS       24981863//25456834//25569111 chr10:62747051-62747052(-) m6A CDS       24981863//25569111 chr10:62747082-62747083(-) m6A CDS       24981863 chr10:62747351-62747352(-) m6A CDS       24981863 chr10:62747381-62747382(-) m6A CDS       24981863//25569111 chr10:62747402-62747403(-) m6A CDS       24981863//25569111 chr10:62747455-62747456(-) m6A CDS       25569111 chr10:62750955-62750956(-) m6A CDS       25683224//24981863//25456834//25569111//22608085 chr10:62751804-62751805(-) m1A CDS       26863196 chr10:62751811-62751812(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753189-62753190(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753201-62753202(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753233-62753234(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753239-62753240(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753318-62753319(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753369-62753370(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:62753395-62753396(-) m6A CDS       25683224//24981863//25569111//22608085 chr10:62756494-62756495(-) m6A CDS       24981863//25569111//22608085 chr10:62756579-62756580(-) m6A CDS       24981863//22608085 chr10:62756602-62756603(-) m6A CDS       25683224//24981863//25456834//22608085 chr10:62760177-62760178(-) m6A CDS       25683224//25412662//24981863//25456834//25569111 chr10:62760228-62760229(-) m6A CDS       25683224//25412662//24981863//25569111 chr10:62771004-62771005(-) m6A CDS       25412662//24981863//22608085 chr10:62776625-62776626(-) Y CDS//exon       26075521 chr10:62790975-62790976(-) m6A CDS       24981863//25569111 chr10:62791021-62791022(-) m6A 5'UTR       24981863//25569111 chr10:62792220-62792221(-) m6A 5'UTR       24981863//25569111 chr10:62792326-62792327(-) m6A 5'UTR       24981863

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-2-5p.2
Interactor2: Ccar1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar