Detail Information

Basic Information:


  VIRBase ID:  

VHID00623778

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Tmtc2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Tmtc2
miRBase
Accession/Entrez ID		 MIMAT0005558 278279
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 8430438D04Rik//D330034A10Rik

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Tmtc2
chr10:105189710-105189711(-) m6A 3'UTR//exon       25683224//25456834//24981863
chr10:105189752-105189753(-) m6A 3'UTR//exon       25683224//25456834//24981863
chr10:105189856-105189857(-) m6A 3'UTR//exon       25683224//25456834//24981863//22608085
chr10:105189863-105189864(-) m6A 3'UTR//exon       25683224//25456834//24981863//22608085
chr10:105189877-105189878(-) m6A 3'UTR//exon       25683224//25456834//24981863//22608085
chr10:105189896-105189897(-) m6A 3'UTR//exon       25683224//25456834//24981863//22608085
chr10:105189904-105189905(-) m6A 3'UTR//exon       25683224//25456834//24981863//22608085
chr10:105189983-105189984(-) m6A 3'UTR//exon       25683224//25456834//24981863//22608085
chr10:105190033-105190034(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//22608085
chr10:105190038-105190039(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//22608085
chr10:105190084-105190085(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//22608085
chr10:105190099-105190100(-) m6A CDS//exon       25683224//25456834//25412662//24981863//22608085
chr10:105190108-105190109(-) m6A CDS//exon       25683224//25456834//25412662//24981863//22608085
chr10:105190134-105190135(-) m6A CDS//exon       25683224//25412662//24981863//22608085
chr10:105322884-105322885(-) Y CDS//exon       26075521
chr10:105322888-105322889(-) m6A CDS//exon       25683224//22608085
chr10:105322949-105322950(-) m6A CDS//exon       25683224//22608085
chr10:105322983-105322984(-) m6A CDS//exon       25683224//22608085
chr10:105323001-105323002(-) m6A CDS//exon       25683224//22608085
chr10:105323012-105323013(-) m6A CDS//exon       25683224//22608085
chr10:105323033-105323034(-) m6A CDS//exon       25683224//22608085
chr10:105323582-105323583(-) m6A CDS//exon       25683224//22608085
chr10:105323616-105323617(-) m6A CDS//exon       25683224//22608085
chr10:105369960-105369961(-) m6A CDS//exon       25683224//24981863
chr10:105370005-105370006(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370024-105370025(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370203-105370204(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105370257-105370258(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105370279-105370280(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105370347-105370348(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105370443-105370444(-) m6A CDS//exon       25683224//25412662//24981863//22608085
chr10:105370475-105370476(-) m6A CDS//exon       25683224//25412662//24981863//22608085
chr10:105370522-105370523(-) m6A CDS//exon       25683224//25412662//24981863//22608085
chr10:105370569-105370570(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370593-105370594(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370641-105370642(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370685-105370686(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370726-105370727(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105370770-105370771(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105413347-105413348(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105413368-105413369(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105413524-105413525(-) m6A CDS//exon       25683224//25456834//24981863//22608085
chr10:105413710-105413711(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105413740-105413741(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105413749-105413750(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105413763-105413764(-) m6A CDS//exon       25683224//24981863//22608085
chr10:105413773-105413774(-) m6A CDS//exon       25683224//24981863
chr10:105506447-105506448(-) m6A intron       25683224//22608085
chr10:105506715-105506716(-) m6A intron       25683224//22608085
chr10:105506764-105506765(-) m6A intron       25683224//22608085
chr10:105506772-105506773(-) m6A intron       25683224//22608085
chr10:105506808-105506809(-) m6A intron       25683224//22608085
chr10:105506817-105506818(-) m6A intron       25683224//22608085
chr10:105535739-105535740(-) m6A exon//intron       25683224//24981863
chr10:105573948-105573949(-) m6A 5'UTR//exon       25683224//25412662//24981863
chr10:105574058-105574059(-) m6A 5'UTR//exon       25683224//25412662//24981863
chr10:105574079-105574080(-) m6A 5'UTR//exon       25683224//25412662//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Tmtc2
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Tmtc2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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