Detail Information

Basic Information:


  VIRBase ID:  

VHID00623752

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Slc35e1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Slc35e1
miRBase
Accession/Entrez ID		 MIMAT0005558 270066
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 6030458H05//AA408278

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Slc35e1
chr8:75006239(-) A-I      3'UTR
chr8:75002663(-) A-I      3'UTR
chr8:75006573(-) A-I      3'UTR
chr8:75002614(-) A-I      3'UTR
chr8:75004250(-) A-I      3'UTR
chr8:75004242(-) A-I      3'UTR
chr8:75002617(-) A-I      3'UTR
chr8:75002675(-) A-I      3'UTR
chr8:75002786(-) A-I      3'UTR
chr8:75004254(-) A-I      3'UTR
chr8:75002685(-) A-I      3'UTR
chr8:75006569(-) A-I      3'UTR
chr8:75004245(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Slc35e1
chr8:72482340(-) C-I exon 3'UTR    22448268
chr8:72482670(-) C-I exon 3'UTR    22448268
chr8:72478715(-) A-I exon 3'UTR    22524474
chr8:72478718(-) A-I exon 3'UTR    22524474
chr8:72478764(-) A-I exon 3'UTR    22524474
chr8:72478776(-) A-I exon 3'UTR    22524474
chr8:72478786(-) A-I exon 3'UTR    22524474
chr8:72478887(-) A-I exon 3'UTR    22524474
chr8:72480343(-) A-I exon 3'UTR    22524474
chr8:72480346(-) A-I exon 3'UTR    22524474
chr8:72480351(-) A-I exon 3'UTR    22524474
chr8:72480355(-) A-I exon 3'UTR    22524474
chr8:72482670(-) A-I exon 3'UTR    22524474
chr8:72482674(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Slc35e1
chr8:72480755-72480756(-) m6A 3'UTR       25569111
chr8:72480762-72480763(-) m6A 3'UTR       25569111
chr8:72480776-72480777(-) m6A 3'UTR       25569111
chr8:72480790-72480791(-) m6A 3'UTR       25569111
chr8:72480819-72480820(-) m6A 3'UTR       25569111
chr8:72480845-72480846(-) m6A 3'UTR       25569111
chr8:72480868-72480869(-) m6A 3'UTR       25569111//22608085
chr8:72481222-72481223(-) m6A 3'UTR       24981863//22608085
chr8:72481724-72481725(-) m6A 3'UTR       25683224//22608085
chr8:72481773-72481774(-) m6A 3'UTR       25683224//22608085
chr8:72481873-72481874(-) m6A 3'UTR       25569111//22608085
chr8:72481895-72481896(-) m6A 3'UTR       25569111//22608085
chr8:72481992-72481993(-) m6A 3'UTR       25683224//25569111
chr8:72482008-72482009(-) m6A 3'UTR       25683224//25569111
chr8:72482527-72482528(-) m6A 3'UTR       25683224//22608085
chr8:72482608-72482609(-) m6A 3'UTR       25683224//22608085
chr8:72482660-72482661(-) m6A 3'UTR       22608085
chr8:72482688-72482689(-) m6A 3'UTR       22608085
chr8:72482854-72482855(-) m6A 3'UTR       25683224//22608085
chr8:72482897-72482898(-) m6A 3'UTR       25683224//25569111//22608085
chr8:72483055-72483056(-) m6A 3'UTR       25683224//24981863//25569111
chr8:72483080-72483081(-) m6A 3'UTR       25683224//24981863//25569111
chr8:72483099-72483100(-) m6A 3'UTR       25683224//24981863//25569111
chr8:72483180-72483181(-) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085
chr8:72483260-72483261(-) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085
chr8:72483389-72483390(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483455-72483456(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483469-72483470(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483488-72483489(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483571-72483572(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483582-72483583(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483599-72483600(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483609-72483610(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483796-72483797(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:72483829-72483830(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr8:72483934-72483935(-) m6A CDS       25683224//25456834//24981863//25569111
chr8:72484615-72484616(-) m6A exon//intron       25683224//25569111//22608085
chr8:72488151-72488152(-) m6A CDS//exon       -
chr8:72488235-72488236(-) m6A CDS//exon       -
chr8:72489467-72489468(-) m6A CDS//exon       22608085
chr8:72492310-72492311(-) m6A CDS       25412662

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Slc35e1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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