Basic Information:

  VIRBase ID:  

VHID00623657

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Zfp568:  NM_001167872     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Zfp568
miRBase Accession/Entrez ID	MIMAT0005558	243905
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	C80731//cha//chato//Gm1691//Znf568

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Zfp568	chr7:29984062-29984063(+) m6A 5'UTR       25412662//24981863//25569111 chr7:29984193-29984194(+) m6A 5'UTR       25569111 chr7:29984223-29984224(+) m6A 5'UTR       25569111 chr7:29985297-29985298(+) m6A 5'UTR//exon       25683224//25569111 chr7:29987609-29987610(+) m6A 5'UTR//exon       25683224 chr7:29987637-29987638(+) m6A 5'UTR//exon       25683224 chr7:29987660-29987661(+) m6A 5'UTR//exon       25683224 chr7:29987713-29987714(+) m6A 5'UTR//exon       25683224//25412662 chr7:29987720-29987721(+) m6A 5'UTR//exon       25683224//25412662 chr7:29989090-29989091(+) m6A CDS//exon       25683224 chr7:29989095-29989096(+) m6A CDS//exon       25683224 chr7:29989118-29989119(+) m6A exon//intron       25683224 chr7:29989214-29989215(+) m6A exon//intron       25683224 chr7:29997752-29997753(+) m6A CDS       25683224 chr7:29998130-29998131(+) m6A CDS       - chr7:29998154-29998155(+) m6A CDS       - chr7:30017206-30017207(+) m6A CDS       25456834//24981863//25569111 chr7:30017243-30017244(+) m6A CDS       25456834//24981863//25569111 chr7:30022231-30022232(+) m6A CDS       25683224//25456834//24981863//25569111 chr7:30022244-30022245(+) m6A CDS       25683224//25456834//24981863//25569111 chr7:30022261-30022262(+) m6A CDS       25683224//25456834//24981863//25569111 chr7:30022287-30022288(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022310-30022311(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022318-30022319(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022328-30022329(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022377-30022378(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022464-30022465(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022598-30022599(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022617-30022618(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022637-30022638(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30022686-30022687(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30023066-30023067(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30023265-30023266(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023301-30023302(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023358-30023359(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023385-30023386(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023469-30023470(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30023497-30023498(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:30023678-30023679(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023706-30023707(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023755-30023756(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023780-30023781(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023800-30023801(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023871-30023872(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:30023930-30023931(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:30023959-30023960(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:30024006-30024007(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:30024104-30024105(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:30024173-30024174(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:30024192-30024193(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:30024438-30024439(+) m6A 3'UTR       25683224//25569111 chr7:30024451-30024452(+) m6A 3'UTR       25683224//25569111 chr7:30024459-30024460(+) m6A 3'UTR       25683224//25569111 chr7:30024515-30024516(+) m6A 3'UTR       25683224//25569111 chr7:30024527-30024528(+) m6A 3'UTR       25683224//25569111 chr7:30024577-30024578(+) m6A 3'UTR       25683224//25569111 chr7:30024625-30024626(+) m6A 3'UTR       25683224//25569111 chr7:30024676-30024677(+) m6A 3'UTR       25683224//25569111 chr7:30024791-30024792(+) m6A 3'UTR       25683224 chr7:30024843-30024844(+) m6A 3'UTR       - chr7:30024866-30024867(+) m6A 3'UTR       - chr7:30024910-30024911(+) m6A 3'UTR       25569111 chr7:30024918-30024919(+) m6A 3'UTR       25569111 chr7:30024938-30024939(+) m6A 3'UTR       25569111 chr7:30024978-30024979(+) m6A 3'UTR       - chr7:30025093-30025094(+) m6A 3'UTR       25683224//25569111 chr7:30025108-30025109(+) m6A 3'UTR       25683224//25569111 chr7:30025140-30025141(+) m6A 3'UTR       25683224//25569111 chr7:30025181-30025182(+) m6A 3'UTR       25683224//25456834//25569111 chr7:30025205-30025206(+) m6A 3'UTR       25683224//25456834//25569111 chr7:30025318-30025319(+) m6A 3'UTR       25569111 chr7:30025342-30025343(+) m6A 3'UTR       25569111 chr7:30025347-30025348(+) m6A 3'UTR       25569111 chr7:30025403-30025404(+) m6A 3'UTR       - chr7:30025532-30025533(+) m6A 3'UTR       25569111 chr7:30025630-30025631(+) m6A 3'UTR       25683224//25569111 chr7:30025641-30025642(+) m6A 3'UTR       25683224//25569111 chr7:30025675-30025676(+) m6A 3'UTR       25683224//25569111 chr7:30025698-30025699(+) m6A 3'UTR       25683224//25569111 chr7:30025720-30025721(+) m6A 3'UTR       25683224//25569111 chr7:30026058-30026059(+) m6A 3'UTR       25569111 chr7:30026100-30026101(+) m6A 3'UTR       25569111 chr7:30026182-30026183(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr7:30026252-30026253(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr7:30026288-30026289(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr7:30026306-30026307(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr7:30026423-30026424(+) m6A 3'UTR       25456834//25569111 chr7:30026610-30026611(+) m6A 3'UTR       25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Zfp568	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Zfp568

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar