Detail Information

Basic Information:


  VIRBase ID:  

VHID00623480

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Wnk1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Wnk1
miRBase
Accession/Entrez ID		 MIMAT0005558 232341
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 6430573H23Rik//EG406236//Hs//Hsn2//mKIAA0344//Prkw//Prkwnk1

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Wnk1
chr6:119925028-119925029(-) m6A 3'UTR//exon       24981863
chr6:119925111-119925112(-) m6A 3'UTR//exon       24981863//25456834
chr6:119925136-119925137(-) m6A 3'UTR//exon       24981863//25456834
chr6:119925169-119925170(-) m6A 3'UTR//exon       24981863
chr6:119925184-119925185(-) m6A 3'UTR//exon       24981863
chr6:119925242-119925243(-) m6A 3'UTR//exon       24981863
chr6:119925699-119925700(-) m6A 3'UTR//exon       24981863
chr6:119925725-119925726(-) m6A 3'UTR//exon       24981863
chr6:119925758-119925759(-) m6A 3'UTR//exon       24981863
chr6:119925868-119925869(-) m6A 3'UTR//exon       24981863
chr6:119925945-119925946(-) m6A 3'UTR//exon       24981863
chr6:119926033-119926034(-) m6A 3'UTR//exon       24981863//25569111
chr6:119926074-119926075(-) m6A 3'UTR//exon       24981863//25569111
chr6:119926085-119926086(-) m6A 3'UTR//exon       24981863//25569111
chr6:119926124-119926125(-) m6A 3'UTR//exon       24981863//25569111
chr6:119926153-119926154(-) m6A 3'UTR//exon       24981863//25569111
chr6:119926198-119926199(-) m6A 3'UTR//exon       24981863//25569111
chr6:119926377-119926378(-) m6A CDS//exon       24981863//25456834//25569111
chr6:119926452-119926453(-) m6A CDS//exon       24981863//25569111
chr6:119926500-119926501(-) m6A CDS//exon       24981863//25569111//22608085
chr6:119927204-119927205(-) m6A CDS//exon       24981863//22608085
chr6:119927231-119927232(-) m6A CDS//exon       24981863//22608085
chr6:119933027-119933028(-) m6A exon//intron       25412662
chr6:119933068-119933069(-) m6A exon//intron       25412662
chr6:119933134-119933135(-) m6A exon//intron       25412662
chr6:119933155-119933156(-) m6A exon//intron       25412662
chr6:119934372-119934373(-) m6A CDS       25412662//24981863//22608085
chr6:119934383-119934384(-) m6A CDS       25412662//24981863//22608085
chr6:119934402-119934403(-) m6A CDS       25412662//24981863//22608085
chr6:119934426-119934427(-) m6A CDS       25412662//24981863//22608085
chr6:119936438-119936439(-) m6A CDS       25412662//22608085
chr6:119937563-119937564(-) m6A CDS       25456834//24981863//25569111//22608085
chr6:119937592-119937593(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr6:119937646-119937647(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr6:119937679-119937680(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr6:119937707-119937708(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085
chr6:119937714-119937715(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085
chr6:119937787-119937788(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111
chr6:119937833-119937834(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111
chr6:119948163-119948164(-) m6A CDS//exon       25683224//24981863//25569111
chr6:119948228-119948229(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr6:119948255-119948256(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr6:119948271-119948272(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr6:119948306-119948307(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr6:119948420-119948421(-) m6A CDS//exon       24981863//25569111
chr6:119948912-119948913(-) m6A CDS//exon       25569111//22608085
chr6:119949140-119949141(-) m6A CDS//exon       24981863//25456834//25569111//22608085
chr6:119949227-119949228(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr6:119949270-119949271(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr6:119949309-119949310(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr6:119949330-119949331(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr6:119949336-119949337(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr6:119949385-119949386(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr6:119949481-119949482(-) m6A exon//intron       25456834//24981863//25569111
chr6:119950667-119950668(-) m6A CDS//exon       22608085
chr6:119951088-119951089(-) m6A CDS//exon       22608085
chr6:119951114-119951115(-) m6A CDS//exon       22608085
chr6:119951649-119951650(-) m6A CDS//exon       22608085
chr6:119951663-119951664(-) m6A CDS//exon       22608085
chr6:119954039-119954040(-) m6A CDS//exon//intron       24981863
chr6:119954121-119954122(-) m6A CDS//exon//intron       24981863
chr6:119962503-119962504(-) m6A CDS//intron       24981863//25569111//22608085
chr6:119962557-119962558(-) m6A CDS//intron       25456834//24981863//25569111//22608085
chr6:119962657-119962658(-) m6A CDS//intron       25456834//24981863//25569111//22608085
chr6:119962666-119962667(-) m6A CDS//intron       25456834//24981863//25569111//22608085
chr6:119962711-119962712(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119962765-119962766(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119962781-119962782(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119962854-119962855(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119962889-119962890(-) m6A CDS//intron       24981863//25569111//22608085
chr6:119963014-119963015(-) m6A CDS//intron       25569111//22608085
chr6:119963044-119963045(-) m6A CDS//intron       25569111//22608085
chr6:119963062-119963063(-) m6A CDS//intron       25569111
chr6:119963119-119963120(-) m6A CDS//intron       25683224//25569111
chr6:119963131-119963132(-) m6A CDS//intron       25683224//24981863//25569111//22608085
chr6:119963182-119963183(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119963226-119963227(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119963269-119963270(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119963275-119963276(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119963388-119963389(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119963436-119963437(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119963463-119963464(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr6:119969294-119969295(-) m6A CDS//exon       24981863//22608085
chr6:119969303-119969304(-) m6A CDS//exon       24981863//22608085
chr6:119969408-119969409(-) m6A CDS//exon       25412662//24981863
chr6:119969420-119969421(-) m6A CDS//exon       25412662//24981863
chr6:119969441-119969442(-) m6A CDS//exon       25412662//24981863
chr6:119969533-119969534(-) m6A CDS//exon       24981863//22608085
chr6:119970793-119970794(-) m6A exon//intron       -
chr6:119970798-119970799(-) m6A exon//intron       -
chr6:119970812-119970813(-) m6A exon//intron       -
chr6:119970924-119970925(-) m6A CDS//exon       24981863
chr6:119971030-119971031(-) m6A CDS//exon       24981863
chr6:119971053-119971054(-) m6A CDS//exon       24981863
chr6:119971062-119971063(-) m6A CDS//exon       24981863
chr6:119972779-119972780(-) m6A CDS//exon       -
chr6:120002218-120002219(-) m6A CDS//exon       25412662//22608085
chr6:120036905-120036906(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:120036913-120036914(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:120036932-120036933(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:120037007-120037008(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:120037150-120037151(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:120037203-120037204(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:120037268-120037269(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr6:120037284-120037285(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr6:120037447-120037448(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr6:120037453-120037454(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr6:120037524-120037525(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr6:120037638-120037639(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111
chr6:120037808-120037809(-) m6A 5'UTR//exon       25412662//24981863//25569111
chr6:120037919-120037920(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111
chr6:120038215-120038216(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111
chr6:120038290-120038291(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111
chr6:120038669-120038670(-) m6A 5'UTR       25412662//24981863//25569111//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Wnk1
Cytoplasm Neuroblastoma cell line (N2A)     22406755
Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Wnk1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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