Basic Information:

  VIRBase ID:  

VHID00623384

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Rabgap1:  NM_001362958     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Rabgap1
miRBase Accession/Entrez ID	MIMAT0005558	227800
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	Gap//Gapcena//mKIAA4104

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rabgap1	chr2:37443446-37443447(+) m6A 5'UTR//exon       25569111 chr2:37451639-37451640(+) m6A exon//intron       25569111 chr2:37469569-37469570(+) m6A 5'UTR//CDS//exon       25412662//24981863//22608085 chr2:37491312-37491313(+) m6A exon//intron       25456834 chr2:37491317-37491318(+) m6A exon//intron       25456834 chr2:37491322-37491323(+) m6A exon//intron       25456834 chr2:37491329-37491330(+) m6A exon//intron       25456834 chr2:37492056-37492057(+) m6A CDS//exon       25412662//22608085 chr2:37492069-37492070(+) m6A CDS//exon       25412662//22608085 chr2:37495669-37495670(+) m6A CDS//exon       24981863//22608085 chr2:37516623-37516624(+) m6A exon//intron       24981863 chr2:37517071-37517072(+) m6A intron       24981863 chr2:37517144-37517145(+) m6A intron       25456834//24981863 chr2:37517190-37517191(+) m6A intron       25456834//24981863//22608085 chr2:37517214-37517215(+) m6A intron       25456834//24981863//22608085 chr2:37517223-37517224(+) m6A intron       25456834//24981863//22608085 chr2:37517388-37517389(+) m6A intron       25683224//25456834//24981863//22608085 chr2:37517394-37517395(+) m6A intron       25683224//25456834//24981863//22608085 chr2:37517447-37517448(+) m6A intron       25683224//25456834//24981863//22608085 chr2:37517512-37517513(+) m6A intron       25683224//25456834//24981863//22608085 chr2:37517621-37517622(+) m6A intron       24981863//22608085 chr2:37517650-37517651(+) m6A intron       24981863 chr2:37517877-37517878(+) m6A intron       24981863 chr2:37518157-37518158(+) m6A intron       24981863 chr2:37518165-37518166(+) m6A intron       24981863 chr2:37518172-37518173(+) m6A intron       24981863 chr2:37518384-37518385(+) m6A intron       25456834//24981863//22608085 chr2:37518443-37518444(+) m6A intron       25456834//24981863//22608085 chr2:37518468-37518469(+) m6A intron       24981863//22608085 chr2:37518607-37518608(+) m6A intron       24981863 chr2:37518924-37518925(+) m6A intron       24981863//26404942 chr2:37519281-37519282(+) m6A intron       24981863 chr2:37519364-37519365(+) m6A intron       24981863 chr2:37519403-37519404(+) m6A intron       24981863 chr2:37519448-37519449(+) m6A intron       24981863 chr2:37519459-37519460(+) m6A intron       24981863 chr2:37519496-37519497(+) m6A intron       24981863 chr2:37519775-37519776(+) m6A intron       24981863 chr2:37519787-37519788(+) m6A intron       24981863 chr2:37519846-37519847(+) m6A intron       24981863 chr2:37519867-37519868(+) m6A intron       24981863 chr2:37532528-37532529(+) m6A CDS//exon       24981863//22608085 chr2:37555778-37555779(+) m6A CDS//exon       25683224//24981863//25412662//22608085 chr2:37556236-37556237(+) m6A CDS//exon       24981863//25412662//22608085 chr2:37556263-37556264(+) m6A CDS//exon       24981863//25412662//22608085 chr2:37556295-37556296(+) m6A CDS//exon       24981863//25412662 chr2:37561391-37561392(+) m6A CDS//exon       24981863//25412662 chr2:37561423-37561424(+) m6A CDS//exon       24981863//25412662 chr2:37561914-37561915(+) m6A CDS//exon       25412662//24981863 chr2:37561930-37561931(+) m6A CDS//exon       25412662//24981863 chr2:37563466-37563467(+) m6A CDS//exon       25412662//24981863 chr2:37563529-37563530(+) m6A CDS//exon       25683224//25412662//24981863 chr2:37563549-37563550(+) m6A CDS//exon       25683224//25412662//24981863 chr2:37563559-37563560(+) m6A CDS//exon       25683224//25412662//24981863 chr2:37563594-37563595(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:37563599-37563600(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:37564772-37564773(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:37564818-37564819(+) m6A CDS//exon       25683224//25412662//24981863//25569111//26404942 chr2:37564833-37564834(+) m6A CDS//exon       25683224//25412662//24981863//25569111//26404942 chr2:37564851-37564852(+) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111//26404942 chr2:37564878-37564879(+) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111//26404942 chr2:37564889-37564890(+) m6A 3'UTR//exon       25683224//25412662//24981863//25456834//25569111//26404942 chr2:37564906-37564907(+) m6A 3'UTR//exon       25683224//25412662//24981863//25456834//25569111//26404942 chr2:37564919-37564920(+) m6A 3'UTR//exon       25683224//25412662//24981863//25456834//25569111//26404942 chr2:37564978-37564979(+) m6A 3'UTR//exon       25412662//24981863 chr2:37565488-37565489(+) m6A 3'UTR       24981863 chr2:37565493-37565494(+) m6A 3'UTR       24981863 chr2:37565498-37565499(+) m6A 3'UTR       24981863//26404942 chr2:37565512-37565513(+) m6A 3'UTR       24981863//26404942 chr2:37565551-37565552(+) m6A 3'UTR       24981863//26404942 chr2:37565572-37565573(+) m6A 3'UTR       24981863//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rabgap1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Rabgap1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar