Basic Information:

  VIRBase ID:  

VHID00623373

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Dclre1c:  NM_146114     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Dclre1c
miRBase Accession/Entrez ID	MIMAT0005558	227525
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9930121L06Rik//A//AI661365//Art//Snm1l

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Dclre1c	chr2:3377584(+) A-I      3'UTR chr2:3377548(+) A-I      3'UTR chr2:3377596(+) A-I      3'UTR chr2:3377528(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Dclre1c	chr2:3460256(+) A-I intron -    22524474 chr2:3460276(+) A-I intron -    22524474 chr2:3460312(+) A-I intron -    22524474 chr2:3460324(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Dclre1c	chr2:3438027-3438028(+) m6A CDS//exon       - chr2:3450326-3450327(+) m6A CDS       25569111 chr2:3450354-3450355(+) m6A CDS       25569111 chr2:3452958-3452959(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3452968-3452969(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3452974-3452975(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453036-3453037(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453077-3453078(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453150-3453151(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453211-3453212(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453233-3453234(+) m6A CDS//intron       25456834//25412662//24981863//25569111//22608085 chr2:3453321-3453322(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr2:3453393-3453394(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr2:3453459-3453460(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr2:3453475-3453476(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr2:3453481-3453482(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr2:3453514-3453515(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr2:3453595-3453596(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453600-3453601(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453635-3453636(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453660-3453661(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr2:3453748-3453749(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111 chr2:3453817-3453818(+) m6A 3'UTR//exon//intron       25456834//24981863//25569111 chr2:3453832-3453833(+) m6A 3'UTR//exon//intron       25456834//24981863 chr2:3453847-3453848(+) m6A 3'UTR//exon//intron       25456834//24981863 chr2:3453853-3453854(+) m6A 3'UTR//exon//intron       24981863 chr2:3453880-3453881(+) m6A 3'UTR//intron       24981863 chr2:3453991-3453992(+) m6A 3'UTR//intron       - chr2:3457546-3457547(+) m6A CDS       24981863 chr2:3457560-3457561(+) m6A CDS       24981863 chr2:3457568-3457569(+) m6A CDS       24981863 chr2:3458727-3458728(+) m6A CDS       24981863 chr2:3458749-3458750(+) m6A CDS       24981863 chr2:3458763-3458764(+) m6A CDS       24981863 chr2:3459332-3459333(+) m6A 3'UTR       24981863 chr2:3462590-3462591(+) m6A 3'UTR       24981863//25569111 chr2:3462637-3462638(+) m6A 3'UTR       25569111 chr2:3462642-3462643(+) m6A 3'UTR       25569111 chr2:3462650-3462651(+) m6A 3'UTR       25569111 chr2:3462655-3462656(+) m6A 3'UTR       25569111 chr2:3462660-3462661(+) m6A 3'UTR       25569111 chr2:3462714-3462715(+) m6A 3'UTR       25456834//25569111 chr2:3463318-3463319(+) m6A 3'UTR       24981863 chr2:3463397-3463398(+) m6A 3'UTR       25456834//24981863//22608085 chr2:3463452-3463453(+) m6A 3'UTR       25456834//24981863//22608085 chr2:3463469-3463470(+) m6A 3'UTR       25456834//24981863//22608085 chr2:3463543-3463544(+) m6A 3'UTR       25456834//24981863 chr2:3463565-3463566(+) m6A 3'UTR       25456834//24981863

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Dclre1c

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar