Detail Information

Basic Information:


  VIRBase ID:  

VHID00623189

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Gabpb2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Gabpb2
miRBase
Accession/Entrez ID		 MIMAT0005558 213054
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1810015F01Rik//5830427M07//9430006E19Rik//A430024B14Rik//AV050852//Gabpb2-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Gabpb2
chr3:94987863(-) A-I      3'UTR
chr3:94991438(-) A-I      3'UTR
chr3:94987483(-) A-I      3'UTR
chr3:94987504(-) A-I      3'UTR
chr3:94987425(-) A-I      3'UTR
chr3:94987500(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Gabpb2
chr3:95183503(-) C-I exon 3'UTR    22448268
chr3:95183561(-) C-I exon 3'UTR    22448268
chr3:95183941(-) C-I exon 3'UTR    22448268
chr3:95183503(-) A-I exon 3'UTR    22524474
chr3:95183561(-) A-I exon 3'UTR    22524474
chr3:95183578(-) A-I exon 3'UTR    22524474
chr3:95183582(-) A-I exon 3'UTR    22524474
chr3:95187516(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Gabpb2
chr3:95182867-95182868(-) m6A 3'UTR       24981863
chr3:95182919-95182920(-) m6A 3'UTR       24981863//25569111
chr3:95182951-95182952(-) m6A 3'UTR       24981863//25569111
chr3:95182967-95182968(-) m6A 3'UTR       24981863//25569111
chr3:95182992-95182993(-) m6A 3'UTR       24981863//25569111
chr3:95183841-95183842(-) m6A 3'UTR       25412662
chr3:95183863-95183864(-) m6A 3'UTR       25412662
chr3:95184817-95184818(-) m6A 3'UTR       24981863
chr3:95186034-95186035(-) Y 3'UTR//exon       26075521
chr3:95186823-95186824(-) m6A 3'UTR       25683224//25569111
chr3:95186832-95186833(-) m6A 3'UTR       25683224//25569111
chr3:95186848-95186849(-) m6A 3'UTR       25683224//25569111
chr3:95186964-95186965(-) m6A 3'UTR       25683224//25569111
chr3:95186970-95186971(-) m6A 3'UTR       25683224//25569111
chr3:95186984-95186985(-) m6A 3'UTR       25683224//25569111
chr3:95187092-95187093(-) m6A 3'UTR       25569111
chr3:95187103-95187104(-) m6A 3'UTR       25569111
chr3:95187115-95187116(-) m6A 3'UTR       25569111
chr3:95187245-95187246(-) m6A 3'UTR       25569111
chr3:95188438-95188439(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111
chr3:95188470-95188471(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111
chr3:95188476-95188477(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111
chr3:95188484-95188485(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111
chr3:95188514-95188515(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr3:95188611-95188612(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:95188683-95188684(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr3:95188716-95188717(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95188833-95188834(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95188906-95188907(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95189172-95189173(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr3:95189195-95189196(-) m6A CDS//exon       25683224//25412662//24981863
chr3:95189248-95189249(-) m6A CDS//exon       25683224//25412662//24981863
chr3:95189343-95189344(-) m6A exon//intron       25412662
chr3:95190615-95190616(-) m6A CDS//exon       -
chr3:95203899-95203900(-) m6A CDS//exon       25412662
chr3:95204004-95204005(-) m6A exon//intron       25412662
chr3:95216253-95216254(-) m6A 5'UTR//exon       25683224//24981863//25569111//22608085
chr3:95217632-95217633(-) m6A 5'UTR//exon       25683224//24981863//25569111
chr3:95217637-95217638(-) m6A 5'UTR//exon       25683224//24981863//25569111
chr3:95217868-95217869(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Gabpb2
Nucleus Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Gabpb2

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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