Basic Information:

  VIRBase ID:  

VHID00623162

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Shank2:  NM_001113373     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Shank2
miRBase Accession/Entrez ID	MIMAT0005558	210274
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	mKIAA1022//P//ProSAP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Shank2	chr7:144285071-144285072(+) m6A CDS       25683224//22608085 chr7:144409533-144409534(+) m6A CDS       25683224//24981863 chr7:144409545-144409546(+) m6A CDS       25683224//24981863 chr7:144409643-144409644(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr7:144409668-144409669(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144409761-144409762(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144409776-144409777(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144409837-144409838(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144409851-144409852(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr7:144410005-144410006(+) m6A CDS       25683224//24981863//25569111//22608085 chr7:144410305-144410306(+) m6A CDS       25412662//24981863//25569111//22608085 chr7:144410401-144410402(+) m6A CDS       24981863//25569111//22608085 chr7:144410559-144410560(+) m6A CDS       24981863//25569111//22608085 chr7:144410686-144410687(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410691-144410692(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410720-144410721(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410727-144410728(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410738-144410739(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410754-144410755(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410778-144410779(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410799-144410800(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:144410886-144410887(+) m6A CDS       25683224//24981863//25569111//22608085 chr7:144410913-144410914(+) m6A CDS       25683224//24981863//25569111//22608085 chr7:144410951-144410952(+) m6A CDS       25683224//24981863//25569111//22608085 chr7:144411008-144411009(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144411087-144411088(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144411099-144411100(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144411115-144411116(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144411243-144411244(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr7:144411270-144411271(+) m6A CDS       25412662//24981863//25569111//22608085 chr7:144411297-144411298(+) m6A CDS       25412662//24981863//25569111 chr7:144411372-144411373(+) m6A CDS       25412662//24981863//25569111 chr7:144411404-144411405(+) m6A CDS       25412662//24981863//25569111 chr7:144411471-144411472(+) m6A CDS       24981863//25569111 chr7:144411582-144411583(+) m6A CDS       25412662//24981863//25569111 chr7:144411600-144411601(+) m6A CDS       25412662//24981863//25569111 chr7:144411689-144411690(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr7:144411771-144411772(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr7:144411792-144411793(+) m6A CDS       25412662//24981863//25569111//22608085 chr7:144417844-144417845(+) m6A exon//intron       25683224//25412662//24981863//25569111 chr7:144420679-144420680(+) m6A CDS       25683224//24981863//22608085 chr7:144420687-144420688(+) m6A CDS       25683224//24981863//22608085 chr7:144420836-144420837(+) m6A CDS       25456834//24981863//25569111//22608085 chr7:144420851-144420852(+) m6A CDS       25456834//24981863//25569111//22608085 chr7:144420948-144420949(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr7:144420962-144420963(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr7:144420980-144420981(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr7:144420990-144420991(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr7:144421010-144421011(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr7:144421040-144421041(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr7:144421055-144421056(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr7:144421097-144421098(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr7:144421116-144421117(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr7:144421127-144421128(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr7:144421160-144421161(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr7:144421299-144421300(+) m6A 3'UTR       24981863//22608085 chr7:144421340-144421341(+) m6A 3'UTR       24981863//22608085 chr7:144421394-144421395(+) m6A 3'UTR       25683224//24981863//22608085 chr7:144421414-144421415(+) m6A 3'UTR       25683224//24981863//22608085 chr7:144421490-144421491(+) m6A 3'UTR       25683224//24981863 chr7:144421599-144421600(+) m6A 3'UTR       24981863 chr7:144421609-144421610(+) m6A 3'UTR       24981863 chr7:144421697-144421698(+) m6A 3'UTR       24981863 chr7:144421988-144421989(+) m6A 3'UTR       24981863 chr7:144422014-144422015(+) m6A 3'UTR       24981863 chr7:144422022-144422023(+) m6A 3'UTR       24981863 chr7:144422172-144422173(+) m6A 3'UTR       24981863//25569111 chr7:144422260-144422261(+) m6A 3'UTR       24981863//25569111//22608085 chr7:144422272-144422273(+) m6A 3'UTR       24981863//25569111//22608085 chr7:144422341-144422342(+) m6A 3'UTR       24981863 chr7:144422409-144422410(+) m6A 3'UTR       25683224//24981863 chr7:144423604-144423605(+) m6A 3'UTR       24981863 chr7:144423614-144423615(+) m6A 3'UTR       24981863 chr7:144423624-144423625(+) m6A 3'UTR       24981863 chr7:144423644-144423645(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Shank2	Dendrite Hippocampal CA1 region     29157358 Nucleus Cerebellar Purkinje cells     18184812

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Shank2

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar