Detail Information

Basic Information:


  VIRBase ID:  

VHID00622968

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Btaf1:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Btaf1
miRBase
Accession/Entrez ID		 MIMAT0005558 107182
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - AI414500//AI447930//E430027O22Rik//TAF170

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Btaf1
chr19:37059478(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Btaf1
chr19:36984988(+) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Btaf1
chr19:36926198-36926199(+) m6A 5'UTR       25412662//24981863//25569111
chr19:36926371-36926372(+) m6A 5'UTR       25569111
chr19:36956425-36956426(+) m6A CDS       24981863//22608085
chr19:36956431-36956432(+) m6A CDS       24981863//22608085
chr19:36956470-36956471(+) m6A CDS       24981863//22608085
chr19:36956523-36956524(+) m6A CDS       25412662//24981863//22608085
chr19:36958428-36958429(+) m6A CDS       25412662//24981863//22608085
chr19:36958436-36958437(+) m6A CDS       25412662//24981863//22608085
chr19:36958470-36958471(+) m6A CDS       25412662//24981863//22608085
chr19:36961705-36961706(+) m6A CDS       25412662//24981863//22608085
chr19:36986645-36986646(+) m6A CDS       24981863//25569111
chr19:36986663-36986664(+) m6A CDS       24981863//25569111
chr19:36986710-36986711(+) m6A CDS       24981863//25569111
chr19:36986760-36986761(+) m6A CDS       24981863//25569111
chr19:36986791-36986792(+) m6A CDS       24981863//25569111
chr19:36986815-36986816(+) m6A CDS       24981863//25569111
chr19:36988147-36988148(+) m6A CDS       25412662//22608085
chr19:36988161-36988162(+) m6A CDS       25412662//22608085
chr19:37010093-37010094(+) m6A CDS       25569111
chr19:37010123-37010124(+) m6A CDS       25569111
chr19:37011327-37011328(+) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:37011380-37011381(+) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr19:37011473-37011474(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr19:37011488-37011489(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr19:37011518-37011519(+) m6A 3'UTR       25683224//25456834//24981863//25569111
chr19:37011556-37011557(+) m6A 3'UTR       25456834//24981863//25569111
chr19:37011640-37011641(+) m6A 3'UTR       25569111
chr19:37012156-37012157(+) m6A 3'UTR       24981863
chr19:37012170-37012171(+) m6A 3'UTR       24981863
chr19:37012192-37012193(+) m6A 3'UTR       24981863
chr19:37012199-37012200(+) m6A 3'UTR       24981863
chr19:37012213-37012214(+) m6A 3'UTR       24981863
chr19:37012649-37012650(+) m6A 3'UTR       24981863
chr19:37012717-37012718(+) m6A 3'UTR       24981863
chr19:37012741-37012742(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Btaf1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Btaf1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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