Basic Information:

  VIRBase ID:  

VHID00622790

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Ckap2:  NM_001004140     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Ckap2
miRBase Accession/Entrez ID	MIMAT0005558	80986
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AI461656//AW228814//LB//LB1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ckap2	chr8:22168854-22168855(-) m6A CDS//exon       25569111 chr8:22168882-22168883(-) m6A CDS//exon       25569111 chr8:22168887-22168888(-) m6A CDS//exon       25569111 chr8:22169767-22169768(-) m6A CDS//exon       25683224//24981863 chr8:22169775-22169776(-) m6A CDS//exon       25683224//24981863 chr8:22169811-22169812(-) m6A CDS//exon       25683224//24981863 chr8:22169849-22169850(-) m6A CDS//exon       25683224//24981863 chr8:22169867-22169868(-) m6A CDS//exon       25683224//24981863 chr8:22169912-22169913(-) m6A CDS//exon       25683224//24981863 chr8:22174768-22174769(-) m6A exon//intron       25456834//25569111 chr8:22174798-22174799(-) m6A exon//intron       25683224//25456834//25569111 chr8:22174826-22174827(-) m6A exon//intron       25683224//25456834//25569111 chr8:22174844-22174845(-) m6A exon//intron       25456834//25569111 chr8:22174891-22174892(-) m6A exon//intron       25456834//25569111 chr8:22174899-22174900(-) m6A exon//intron       25456834//25569111 chr8:22175102-22175103(-) m6A CDS//exon       25569111 chr8:22175767-22175768(-) m6A CDS//exon       24981863//25569111 chr8:22175786-22175787(-) m6A CDS//exon       25412662//24981863//25569111 chr8:22175791-22175792(-) m6A CDS//exon       25412662//24981863//25569111 chr8:22175840-22175841(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr8:22175860-22175861(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr8:22175871-22175872(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:22175936-22175937(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:22176791-22176792(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:22176874-22176875(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:22176894-22176895(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:22176970-22176971(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr8:22177045-22177046(-) m6A CDS       25683224//25412662//24981863//25569111 chr8:22177103-22177104(-) m6A CDS       24981863//25569111 chr8:22177126-22177127(-) m6A CDS       24981863//25569111 chr8:22177184-22177185(-) m6A CDS       24981863//25569111 chr8:22177234-22177235(-) m6A CDS       24981863//25456834//25569111 chr8:22177355-22177356(-) m6A CDS       25683224//25456834//24981863//25569111 chr8:22177360-22177361(-) m6A CDS       25683224//25456834//24981863//25569111 chr8:22177397-22177398(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr8:22177418-22177419(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr8:22177431-22177432(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr8:22177541-22177542(-) m6A CDS       25412662//24981863//25569111 chr8:22177674-22177675(-) m6A CDS       25412662//24981863//25569111 chr8:22177681-22177682(-) m6A CDS       25412662//24981863//25569111 chr8:22179533-22179534(-) m6A CDS       24981863//25569111 chr8:22179550-22179551(-) m6A CDS       24981863//25569111 chr8:22179578-22179579(-) m6A CDS       24981863//25569111 chr8:22179584-22179585(-) m6A CDS       24981863//25569111 chr8:22185700-22185701(-) m6A CDS       24981863//25569111 chr8:22185727-22185728(-) m6A CDS       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Ckap2	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Ckap2

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar