Detail Information

Basic Information:


  VIRBase ID:  

VHID00622778

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Trim39:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Trim39
miRBase
Accession/Entrez ID
MIMAT0005558 79263
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1100001D15Rik//E130103K13Rik//mKIAA4179//RBCC-B30.//RBCC-B30.2//Rnf//Rnf23//tf//tfp

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Trim39
chr17:36270063(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Trim39
chr17:36258891-36258892(-) m6A 3'UTR       24981863//22608085
chr17:36258970-36258971(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:36259012-36259013(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:36259019-36259020(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:36259025-36259026(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:36259066-36259067(-) m6A 3'UTR       25456834//24981863//25569111
chr17:36259071-36259072(-) m6A 3'UTR       25456834//24981863//25569111
chr17:36259122-36259123(-) m6A 3'UTR       25569111
chr17:36259447-36259448(-) m6A 3'UTR       25569111
chr17:36259463-36259464(-) m6A 3'UTR       25569111
chr17:36259478-36259479(-) m6A 3'UTR       25569111
chr17:36260460-36260461(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085
chr17:36260503-36260504(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr17:36260542-36260543(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr17:36260620-36260621(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:36260654-36260655(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:36260673-36260674(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:36260695-36260696(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:36260723-36260724(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:36260827-36260828(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111
chr17:36260835-36260836(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111
chr17:36260840-36260841(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111
chr17:36260897-36260898(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111
chr17:36260905-36260906(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111
chr17:36261500-36261501(-) m6A 3'UTR//CDS       25683224//25569111
chr17:36261549-36261550(-) m6A 3'UTR//CDS//exon       25569111
chr17:36263792-36263793(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr17:36263804-36263805(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr17:36263846-36263847(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr17:36263851-36263852(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr17:36263880-36263881(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr17:36263956-36263957(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr17:36264005-36264006(-) m6A exon//intron       25683224//25412662//24981863
chr17:36267187-36267188(-) m6A 3'UTR//CDS//exon       24981863
chr17:36267214-36267215(-) m6A 3'UTR//CDS//exon       24981863
chr17:36267793-36267794(-) m6A 3'UTR//intron       25569111
chr17:36267807-36267808(-) m6A 3'UTR//intron       25569111
chr17:36267853-36267854(-) m6A 3'UTR//intron       25569111
chr17:36267930-36267931(-) m6A 3'UTR//intron       25569111
chr17:36267940-36267941(-) m6A 3'UTR//intron       25569111
chr17:36268725-36268726(-) m6A CDS//exon       25569111
chr17:36268847-36268848(-) m6A CDS//exon       24981863//25569111
chr17:36268873-36268874(-) m6A CDS//exon       24981863//25569111
chr17:36268885-36268886(-) m6A CDS//exon       24981863//25569111
chr17:36269115-36269116(-) m6A 5'UTR//exon//intron       24981863
chr17:36269147-36269148(-) m6A 5'UTR//exon//intron       24981863
chr17:36269201-36269202(-) m6A 5'UTR//exon//intron       24981863
chr17:36271022-36271023(-) m6A exon//intron       25412662
chr17:36271102-36271103(-) m6A exon//intron       25412662
chr17:36271351-36271352(-) m6A 5'UTR//exon//intron       25412662//24981863
chr17:36271570-36271571(-) m6A exon//intron       25412662
chr17:36271638-36271639(-) m6A exon//intron       25412662
chr17:36271759-36271760(-) m6A exon//intron       25412662//24981863//25569111
chr17:36271831-36271832(-) m6A exon//intron       24981863//25569111
chr17:36271862-36271863(-) m6A exon//intron       24981863//25569111
chr17:36271899-36271900(-) m6A 5'UTR//exon       25569111
chr17:36271933-36271934(-) m6A 5'UTR//exon       25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Trim39
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Trim39

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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