Basic Information:

  VIRBase ID:  

VHID00622229

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Lrrc40:  NM_001289525     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Lrrc40
miRBase Accession/Entrez ID	MIMAT0005558	67144
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2610040E16Rik//AI837674

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Lrrc40	chr3:158036789-158036790(+) m6A CDS       24981863//25569111 chr3:158036864-158036865(+) m6A CDS       25569111 chr3:158040567-158040568(+) m6A CDS//intron       24981863//22608085 chr3:158041634-158041635(+) m6A 3'UTR//CDS//intron       24981863//22608085 chr3:158041647-158041648(+) m6A 3'UTR//CDS//intron       24981863//22608085 chr3:158066261-158066262(+) m6A 3'UTR//exon       - chr3:158066357-158066358(+) m6A 3'UTR//exon       24981863 chr3:158066426-158066427(+) m6A 3'UTR//exon       24981863 chr3:158066515-158066516(+) m6A 3'UTR//exon       24981863//25569111 chr3:158066525-158066526(+) m6A 3'UTR//exon       24981863//25569111 chr3:158066550-158066551(+) m6A 3'UTR       24981863//25569111 chr3:158066593-158066594(+) m6A 3'UTR       24981863 chr3:158066615-158066616(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Lrrc40	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Lrrc40

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar