Detail Information

Basic Information:


  VIRBase ID:  

VHID00622205

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:           Trim59:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m108-1-3p Trim59
miRBase
Accession/Entrez ID		 MIMAT0005558 66949
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2310035M22Rik//2700022F13Rik//Mrf//Mrf1//TSBF//TSBF1

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Trim59
chr3:69035749-69035750(-) m6A 3'UTR       24981863//22608085
chr3:69035788-69035789(-) m6A 3'UTR       24981863//22608085
chr3:69035815-69035816(-) m6A 3'UTR       24981863
chr3:69035863-69035864(-) m6A 3'UTR       25569111
chr3:69036161-69036162(-) m6A 3'UTR       25569111//22608085
chr3:69036181-69036182(-) m6A 3'UTR       25569111//22608085
chr3:69036603-69036604(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr3:69036620-69036621(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr3:69036658-69036659(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr3:69036707-69036708(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr3:69036790-69036791(-) m6A 3'UTR       25456834//24981863//25569111
chr3:69036857-69036858(-) m6A CDS       25456834//24981863//25569111
chr3:69036872-69036873(-) m6A CDS       25456834//24981863//25569111
chr3:69037013-69037014(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr3:69037030-69037031(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr3:69037204-69037205(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037210-69037211(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037315-69037316(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037414-69037415(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037498-69037499(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr3:69037533-69037534(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr3:69037555-69037556(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr3:69037708-69037709(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037736-69037737(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037778-69037779(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69037910-69037911(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr3:69043733-69043734(-) m6A exon//intron       25569111
chr3:69043771-69043772(-) m6A 5'UTR//exon       25569111
chr3:69044733-69044734(-) m6A 5'UTR       25412662//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Trim59
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m108-1-3p
Interactor2: Trim59

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

Starting a new search, please wait ...