Basic Information:

  VIRBase ID:  

VHID00621716

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Tfrc:  NM_011638     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Tfrc
miRBase Accession/Entrez ID	MIMAT0005558	22042
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2610028K12Rik//CD71//E430033M20Rik//Mtv//Mtvr//Mtvr1//p9//p90//TFR//TFR1//TR//Trfr

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Tfrc	chr16:32609017-32609018(+) m6A 5'UTR       25683224//25456834//24981863//25569111 chr16:32614576-32614577(+) m6A CDS       24981863//25569111//22608085 chr16:32614645-32614646(+) m6A CDS       25412662//25569111 chr16:32614702-32614703(+) m6A CDS       25412662//25569111//22608085 chr16:32614723-32614724(+) m6A CDS       25412662//25569111//22608085 chr16:32615232-32615233(+) m6A CDS//exon       25569111//22608085 chr16:32615253-32615254(+) m6A CDS//exon       25569111//22608085 chr16:32615272-32615273(+) m6A CDS//exon       25569111//22608085 chr16:32615287-32615288(+) m6A CDS//exon       25569111//22608085 chr16:32615296-32615297(+) m6A CDS//exon       25569111//22608085 chr16:32617183-32617184(+) m6A CDS       25412662//22608085 chr16:32618222-32618223(+) m6A CDS       25412662//22608085 chr16:32618254-32618255(+) m6A CDS       25412662//22608085 chr16:32618264-32618265(+) m6A CDS       25412662//22608085 chr16:32620422-32620423(+) m6A CDS//exon       22608085 chr16:32620518-32620519(+) m6A CDS//exon       22608085 chr16:32620529-32620530(+) m6A exon//intron       22608085 chr16:32626721-32626722(+) m6A CDS//exon       25569111//22608085 chr16:32626747-32626748(+) m6A CDS//exon       25569111//22608085 chr16:32626758-32626759(+) m6A CDS//exon       25569111//22608085 chr16:32630196-32630197(+) m6A CDS//exon       24981863//25569111 chr16:32630237-32630238(+) m6A CDS//exon       24981863//25569111 chr16:32630250-32630251(+) m6A CDS//exon       24981863//25569111 chr16:32630273-32630274(+) m6A CDS//exon       24981863//25569111//26404942 chr16:32630381-32630382(+) m6A 3'UTR//exon       24981863//25569111 chr16:32631299-32631300(+) m6A 3'UTR//exon       22608085 chr16:32632101-32632102(+) m6A 3'UTR//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Tfrc	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Muscle cells     9367630 Rough endoplasmic reticulum Fibroblasts     7493976

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Tfrc

Evidence Support:

Prediction-Evidence	Rep
Support Database	RepTar