Basic Information:

  VIRBase ID:  

VHID00621549

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Rbpj:  NM_001277116     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Rbpj
miRBase Accession/Entrez ID	MIMAT0005558	19664
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AI843960//CBF1//Igk//Igkj//Igkjrb//Igkrsbp//RBP//RBP-J//RBP-J kappa//RBP-Jkappa//RBPjk//Rbpsuh

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rbpj	chr5:53555857-53555858(+) m6A 5'UTR//exon//intron       25569111 chr5:53555908-53555909(+) m6A exon//intron       25569111 chr5:53555958-53555959(+) m6A exon//intron       25569111 chr5:53556058-53556059(+) m6A exon//intron       25683224 chr5:53556743-53556744(+) m6A exon//intron       25683224 chr5:53566197-53566198(+) m6A CDS//intron       25683224 chr5:53590231-53590232(+) m6A 5'UTR//intron       25683224 chr5:53590288-53590289(+) m6A 5'UTR//intron       25683224 chr5:53590403-53590404(+) m6A 5'UTR//CDS//intron       25412662//24981863//25569111 chr5:53590431-53590432(+) m6A 5'UTR//CDS//intron       25412662//24981863//25569111 chr5:53625338-53625339(+) m6A exon//intron       24981863 chr5:53625388-53625389(+) m6A exon//intron       24981863 chr5:53625411-53625412(+) m6A exon//intron       24981863 chr5:53636001-53636002(+) m6A CDS//exon       24981863 chr5:53639346-53639347(+) m6A exon//intron       22608085 chr5:53639359-53639360(+) m6A exon//intron       22608085 chr5:53639364-53639365(+) m6A exon//intron       22608085 chr5:53639375-53639376(+) m6A exon//intron       22608085 chr5:53652626-53652627(+) m6A CDS       - chr5:53652663-53652664(+) m6A CDS       22608085 chr5:53652679-53652680(+) m6A CDS       22608085 chr5:53653113-53653114(+) m6A CDS       25569111//22608085 chr5:53653122-53653123(+) m6A CDS       25569111//22608085 chr5:53653127-53653128(+) m6A CDS       25569111//22608085 chr5:53653174-53653175(+) m6A CDS       24981863//25569111 chr5:53653336-53653337(+) m6A CDS       24981863//25569111 chr5:53653537-53653538(+) m6A CDS       25456834//24981863 chr5:53653543-53653544(+) m6A CDS       25456834//24981863 chr5:53653639-53653640(+) m6A 3'UTR       25456834//24981863 chr5:53653645-53653646(+) m6A 3'UTR       25456834//24981863 chr5:53653696-53653697(+) m6A 3'UTR       25456834//24981863 chr5:53653750-53653751(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr5:53653793-53653794(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr5:53653900-53653901(+) m6A 3'UTR       25456834//24981863//25569111 chr5:53653936-53653937(+) m6A 3'UTR       25456834//24981863//25569111 chr5:53653942-53653943(+) m6A 3'UTR       25456834//24981863//25569111 chr5:53653953-53653954(+) m6A 3'UTR       25456834//24981863//25569111 chr5:53653961-53653962(+) m6A 3'UTR       25456834//24981863//25569111 chr5:53653969-53653970(+) m6A 3'UTR       25456834//24981863//25569111 chr5:53654048-53654049(+) m6A 3'UTR       24981863//25569111 chr5:53654132-53654133(+) m6A 3'UTR       24981863//25569111 chr5:53654139-53654140(+) m6A 3'UTR       24981863//25569111 chr5:53656444-53656445(+) m6A 3'UTR       24981863 chr5:53656466-53656467(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rbpj	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Rbpj

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar