Basic Information:

  VIRBase ID:  

VHID00621173

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m108-1-3p:  MIMAT0005558          Fxr1:  NM_001113188     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m108-1-3p	Fxr1
miRBase Accession/Entrez ID	MIMAT0005558	14359
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	1110050J02Rik//9530073J07Rik//AI851072//Fxr//Fxr1h//Fxr1p

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fxr1	chr3:34039551-34039552(+) m6A CDS//exon//intron       24981863//25569111 chr3:34046523-34046524(+) m6A 3'UTR//CDS       22608085 chr3:34046572-34046573(+) m6A 3'UTR//CDS       22608085 chr3:34046636-34046637(+) m6A exon//intron       22608085 chr3:34047793-34047794(+) m6A exon//intron       22608085 chr3:34049160-34049161(+) m6A 3'UTR//CDS       22608085 chr3:34049294-34049295(+) m6A 3'UTR//CDS       22608085 chr3:34054302-34054303(+) m6A 3'UTR//CDS       24981863//22608085 chr3:34054315-34054316(+) m6A 3'UTR//CDS       24981863//22608085 chr3:34058031-34058032(+) m6A 3'UTR//CDS       24981863//22608085 chr3:34058094-34058095(+) m6A 3'UTR//CDS//intron       24981863//22608085 chr3:34061859-34061860(+) m6A 3'UTR//CDS       25412662//25569111//22608085 chr3:34061922-34061923(+) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085 chr3:34061938-34061939(+) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085 chr3:34061999-34062000(+) m6A 3'UTR//CDS       25412662//24981863//25569111 chr3:34064133-34064134(+) m6A 3'UTR//CDS       25412662//24981863//25569111 chr3:34064177-34064178(+) m6A 3'UTR//CDS       24981863//25569111 chr3:34064184-34064185(+) m6A 3'UTR//CDS       24981863//25569111 chr3:34064246-34064247(+) m6A 3'UTR//CDS       24981863//25569111//22608085 chr3:34064275-34064276(+) m6A 3'UTR//CDS       24981863//25569111//22608085 chr3:34064989-34064990(+) m6A CDS//intron       24981863//25569111//22608085 chr3:34065046-34065047(+) m6A CDS//intron       24981863//25569111 chr3:34068203-34068204(+) m6A 3'UTR//CDS//intron       25569111 chr3:34068211-34068212(+) m6A 3'UTR//CDS//intron       25569111 chr3:34068225-34068226(+) m6A 3'UTR//CDS//intron       24981863//25569111 chr3:34068238-34068239(+) m6A 3'UTR//CDS//intron       24981863//25569111 chr3:34069027-34069028(+) m6A 3'UTR//CDS       24981863//25569111 chr3:34069033-34069034(+) m6A 3'UTR//CDS       24981863//25569111 chr3:34069046-34069047(+) m6A 3'UTR//CDS       24981863//25569111 chr3:34069484-34069485(+) m6A 3'UTR       - chr3:34069550-34069551(+) m6A 3'UTR       22608085 chr3:34069603-34069604(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fxr1	Cell body Motor cortex     28082376 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m108-1-3p
Interactor2: Fxr1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar