Basic Information:

  VIRBase ID:  

VHID00620473

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Npat:  NM_001081152     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Npat
miRBase Accession/Entrez ID	MIMAT0005555	244879
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	6820401K01//AI427561//BB112559

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Npat	chr9:53537061-53537062(+) m6A 5'UTR       24981863//25569111 chr9:53556446-53556447(+) m6A CDS       24981863//22608085 chr9:53556457-53556458(+) m6A CDS       24981863//22608085 chr9:53562155-53562156(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562190-53562191(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562199-53562200(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562216-53562217(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562303-53562304(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562460-53562461(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562473-53562474(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562516-53562517(+) Y CDS//exon       26075521 chr9:53562586-53562587(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53562614-53562615(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562625-53562626(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562632-53562633(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562640-53562641(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562646-53562647(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562717-53562718(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53562786-53562787(+) m6A CDS       25683224//25456834//24981863//25569111 chr9:53562804-53562805(+) m6A CDS       25683224//25456834//24981863//25569111 chr9:53562942-53562943(+) m6A CDS       24981863//25569111 chr9:53563051-53563052(+) m6A CDS       24981863//25569111 chr9:53563072-53563073(+) m6A CDS       24981863//25569111 chr9:53563196-53563197(+) m6A CDS       24981863 chr9:53563273-53563274(+) m6A CDS       24981863//25569111 chr9:53563328-53563329(+) m6A CDS       24981863//25569111//22608085 chr9:53563344-53563345(+) m6A CDS       24981863//25569111//22608085 chr9:53563364-53563365(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53563527-53563528(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53563612-53563613(+) m6A CDS//exon       25456834//24981863//25569111//22608085 chr9:53563664-53563665(+) m6A CDS//exon       24981863//25569111 chr9:53567001-53567002(+) m6A CDS//exon       24981863 chr9:53567009-53567010(+) m6A CDS//exon       24981863 chr9:53570079-53570080(+) m6A CDS       25456834//24981863//25569111 chr9:53570099-53570100(+) m6A CDS       25456834//24981863//25569111 chr9:53570240-53570241(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53570304-53570305(+) m6A CDS       25456834//24981863//25569111//22608085 chr9:53570344-53570345(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53570374-53570375(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53570522-53570523(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:53570532-53570533(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:53570607-53570608(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53570624-53570625(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53570653-53570654(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53570670-53570671(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53570685-53570686(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53570782-53570783(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53570909-53570910(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53570938-53570939(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53570951-53570952(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53571010-53571011(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53571052-53571053(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:53571113-53571114(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:53572613-53572614(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:53572652-53572653(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:53572660-53572661(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:53572668-53572669(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:53572685-53572686(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:53572725-53572726(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:53572736-53572737(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr9:53572822-53572823(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr9:53572852-53572853(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr9:53572874-53572875(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr9:53572888-53572889(+) m6A 3'UTR       25456834//24981863//25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Npat	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Npat

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar