Basic Information:

  VIRBase ID:  

VHID00620325

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Pdap1:  NR_156700     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Pdap1
miRBase Accession/Entrez ID	MIMAT0005555	231887
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	HAS//HASPP28//P//PAP//PAP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Pdap1	chr5:145130044-145130045(-) m6A 3'UTR       25412662//25456834 chr5:145130097-145130098(-) m6A 3'UTR//exon       25412662 chr5:145130112-145130113(-) m6A 3'UTR//exon       25412662 chr5:145130268-145130269(-) m6A 3'UTR//exon       25412662//24981863//25456834//25569111 chr5:145130287-145130288(-) m6A 3'UTR//exon       25412662//24981863//25456834//25569111 chr5:145131407-145131408(-) m6A CDS//exon       25683224//25412662//24981863//25456834//22608085 chr5:145131454-145131455(-) m6A CDS//exon       25683224//25412662//24981863//25456834//22608085 chr5:145132919-145132920(-) m6A CDS//exon       25683224//25412662//24981863//25456834//22608085 chr5:145132939-145132940(-) m6A CDS//exon       25683224//25412662//24981863//22608085 chr5:145133196-145133197(-) m6A exon//intron       25683224//25412662//24981863 chr5:145133227-145133228(-) m6A exon//intron       25683224//25412662//24981863 chr5:145133258-145133259(-) m6A exon//intron       25683224//25412662//24981863 chr5:145134997-145134998(-) m6A exon//intron       24981863 chr5:145135051-145135052(-) m6A exon//intron       25683224//25412662//24981863//25456834 chr5:145135101-145135102(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr5:145135152-145135153(-) m1A CDS//exon       26863196 chr5:145135160-145135161(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr5:145135167-145135168(-) m1A CDS//exon       26863196 chr5:145135175-145135176(-) m6A exon//intron       25683224//25412662//24981863//25456834//25569111 chr5:145135306-145135307(-) m6A exon//intron       25683224//25412662//24981863//25569111 chr5:145136827-145136828(-) m6A exon//intron       24981863//25569111//22608085 chr5:145136837-145136838(-) m6A exon//intron       24981863//25569111//22608085 chr5:145140072-145140073(-) m6A 5'UTR       25683224//25412662//24981863//25456834//25569111 chr5:145140151-145140152(-) m6A 5'UTR       25412662//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Pdap1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Pdap1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar