Basic Information:

  VIRBase ID:  

VHID00620243

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Fam78b:  NM_001160261     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Fam78b
miRBase Accession/Entrez ID	MIMAT0005555	226610
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	C030014K22Rik//C030020L09Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fam78b	chr1:167001614-167001615(+) m6A CDS       25683224//24981863 chr1:167001673-167001674(+) m6A CDS       25683224//24981863 chr1:167001700-167001701(+) m6A CDS       25683224//24981863 chr1:167001757-167001758(+) m6A CDS       25683224//24981863 chr1:167078548-167078549(+) m6A CDS       25683224//24981863//22608085 chr1:167078622-167078623(+) m6A CDS       25683224//25456834//24981863//22608085 chr1:167078633-167078634(+) m6A CDS       25683224//25456834//24981863//22608085 chr1:167078769-167078770(+) m6A CDS       25683224//25456834//24981863//22608085 chr1:167078802-167078803(+) m6A CDS       25683224//25456834//24981863//22608085 chr1:167078834-167078835(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr1:167078859-167078860(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr1:167078871-167078872(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr1:167078915-167078916(+) m6A CDS       25683224//25456834//24981863//22608085 chr1:167079028-167079029(+) m6A CDS       25683224//25456834//24981863//22608085 chr1:167079065-167079066(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079085-167079086(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079100-167079101(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079136-167079137(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079159-167079160(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079224-167079225(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079268-167079269(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079284-167079285(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079349-167079350(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079395-167079396(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079452-167079453(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr1:167079476-167079477(+) m6A 3'UTR//intron       25456834//24981863//22608085 chr1:167079624-167079625(+) m6A 3'UTR//intron       25456834//24981863 chr1:167079635-167079636(+) m6A 3'UTR//intron       25456834//24981863 chr1:167079640-167079641(+) m6A 3'UTR//intron       25456834//24981863 chr1:167079677-167079678(+) m6A 3'UTR//intron       25456834//24981863 chr1:167079715-167079716(+) m6A 3'UTR//intron       25456834//24981863 chr1:167081090-167081091(+) m6A 3'UTR//intron       24981863 chr1:167087990-167087991(+) m6A 3'UTR       24981863 chr1:167088017-167088018(+) m6A 3'UTR       24981863//22608085 chr1:167088087-167088088(+) m6A 3'UTR       24981863//22608085 chr1:167088225-167088226(+) m6A 3'UTR       24981863//22608085 chr1:167088280-167088281(+) m6A 3'UTR       24981863//22608085 chr1:167088322-167088323(+) m6A 3'UTR       24981863//22608085 chr1:167088341-167088342(+) m6A 3'UTR       24981863//22608085 chr1:167088350-167088351(+) m6A 3'UTR       24981863//22608085 chr1:167088524-167088525(+) m6A 3'UTR       24981863//22608085 chr1:167088594-167088595(+) m6A 3'UTR       24981863//22608085 chr1:167089319-167089320(+) m6A 3'UTR       24981863 chr1:167090721-167090722(+) m6A 3'UTR       24981863 chr1:167090749-167090750(+) m6A 3'UTR       24981863 chr1:167090796-167090797(+) m6A 3'UTR       24981863//22608085 chr1:167090932-167090933(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fam78b	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Fam78b

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar