Basic Information:

  VIRBase ID:  

VHID00620186

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Phactr1:  NM_001302635     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Phactr1
miRBase Accession/Entrez ID	MIMAT0005555	218194
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9630030F18Rik//Rp//Rpel1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Phactr1	chr13:42950949(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Phactr1	chr13:42855580(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Phactr1	chr13:42681530-42681531(+) m6A 5'UTR//intron       24981863//22608085 chr13:42866425-42866426(+) m6A 5'UTR//intron       25412662 chr13:42866458-42866459(+) m6A 5'UTR//intron       25412662 chr13:42866469-42866470(+) m6A 5'UTR//intron       25412662 chr13:42866853-42866854(+) m6A exon//intron       25412662 chr13:42956728-42956729(+) m6A CDS//exon       25412662//22608085 chr13:42956829-42956830(+) m6A exon//intron       25412662//24981863 chr13:43057295-43057296(+) m6A CDS       25412662//22608085 chr13:43057328-43057329(+) m6A CDS       25412662//22608085 chr13:43057341-43057342(+) m6A CDS       25412662//22608085 chr13:43059634-43059635(+) m6A CDS//intron       25412662 chr13:43059681-43059682(+) m6A CDS//intron       25412662 chr13:43059692-43059693(+) m6A CDS//intron       25412662 chr13:43059703-43059704(+) m6A CDS//intron       25412662 chr13:43059745-43059746(+) m6A CDS//intron       25412662 chr13:43077939-43077940(+) m6A CDS       25683224//22608085 chr13:43077944-43077945(+) m6A CDS       25683224//22608085 chr13:43096679-43096680(+) m6A CDS       25412662//22608085 chr13:43096695-43096696(+) m6A CDS       25683224//25412662//22608085 chr13:43096736-43096737(+) m6A CDS       25683224//25412662//22608085 chr13:43096749-43096750(+) m6A CDS       25683224//25412662//22608085 chr13:43096779-43096780(+) m6A CDS       25683224//25412662//22608085 chr13:43112270-43112271(+) m6A exon//intron       25412662 chr13:43123013-43123014(+) m6A CDS//exon       25412662//22608085 chr13:43123028-43123029(+) m6A CDS//exon       25412662//22608085 chr13:43123034-43123035(+) m6A CDS//exon       25412662//22608085 chr13:43123042-43123043(+) m6A CDS//exon       25412662//22608085 chr13:43125947-43125948(+) m6A exon//intron       25412662 chr13:43128147-43128148(+) m6A CDS//exon       24981863 chr13:43128156-43128157(+) m6A CDS//exon       24981863 chr13:43132945-43132946(+) m6A CDS//exon       25412662//24981863 chr13:43133007-43133008(+) m6A CDS//exon       25412662//24981863 chr13:43133025-43133026(+) m6A CDS//exon       25412662//24981863 chr13:43133036-43133037(+) m6A CDS//exon       24981863 chr13:43133055-43133056(+) m6A CDS//exon       24981863 chr13:43133943-43133944(+) m6A CDS//exon       24981863 chr13:43134282-43134283(+) m6A exon//intron       22608085 chr13:43134292-43134293(+) m6A exon//intron       22608085 chr13:43135226-43135227(+) m6A 3'UTR//exon       24981863//22608085 chr13:43135242-43135243(+) m6A 3'UTR//exon       25683224//25412662//24981863//22608085 chr13:43135291-43135292(+) m6A 3'UTR//exon       25683224//25412662//24981863//22608085 chr13:43135405-43135406(+) m6A 3'UTR//exon       25412662//24981863//22608085 chr13:43135431-43135432(+) m6A 3'UTR//exon       25412662//24981863//22608085 chr13:43135502-43135503(+) m6A 3'UTR//intron       25412662//24981863//22608085 chr13:43135508-43135509(+) m6A 3'UTR//intron       25412662//24981863//22608085 chr13:43135531-43135532(+) m6A 3'UTR//intron       25412662//24981863//22608085 chr13:43135554-43135555(+) m6A 3'UTR//intron       25412662//24981863//22608085 chr13:43135590-43135591(+) m6A 3'UTR//intron       25412662//24981863 chr13:43135608-43135609(+) m6A 3'UTR//intron       25412662//24981863 chr13:43135800-43135801(+) m6A 3'UTR//intron       24981863//22608085 chr13:43135816-43135817(+) m6A 3'UTR//intron       24981863//22608085 chr13:43135906-43135907(+) m6A 3'UTR//intron       24981863//22608085 chr13:43135937-43135938(+) m6A 3'UTR//intron       24981863//22608085 chr13:43135942-43135943(+) m6A 3'UTR//intron       24981863//22608085 chr13:43135957-43135958(+) m6A 3'UTR//intron       24981863//22608085 chr13:43135976-43135977(+) m6A 3'UTR//intron       24981863//22608085 chr13:43138207-43138208(+) Y 3'UTR//exon//intron       26075521 chr13:43138382-43138383(+) m6A 3'UTR//exon       24981863//26404942 chr13:43138394-43138395(+) m6A 3'UTR//exon       24981863//26404942 chr13:43138431-43138432(+) m6A 3'UTR//exon       24981863//26404942

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Phactr1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar