Detail Information

Basic Information:


  VIRBase ID:  

VHID00619948

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:           Txlna:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m107-1-5p Txlna
miRBase
Accession/Entrez ID		 MIMAT0005555 109658
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2600010N21Rik//AI425952//AW209241//IL//Il14//Tx//Txln

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Txlna
chr4:129626292-129626293(-) m6A 3'UTR//exon       25569111
chr4:129626330-129626331(-) m6A 3'UTR//exon       25569111
chr4:129626370-129626371(-) m6A 3'UTR//exon       25569111
chr4:129627725-129627726(-) m6A 3'UTR//exon       24981863
chr4:129627795-129627796(-) m6A 3'UTR//exon       24981863//25569111
chr4:129627820-129627821(-) m6A 3'UTR//exon       24981863//25569111
chr4:129627904-129627905(-) m6A 3'UTR//exon       24981863//25569111
chr4:129628133-129628134(-) m6A 3'UTR//exon       25569111
chr4:129628148-129628149(-) m6A 3'UTR//exon       25569111
chr4:129628461-129628462(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr4:129628483-129628484(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr4:129628535-129628536(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr4:129628641-129628642(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr4:129628664-129628665(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr4:129628721-129628722(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr4:129628778-129628779(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr4:129628853-129628854(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr4:129628915-129628916(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr4:129628927-129628928(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr4:129629015-129629016(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr4:129629085-129629086(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr4:129629119-129629120(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr4:129629184-129629185(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr4:129629194-129629195(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr4:129629612-129629613(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr4:129630326-129630327(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr4:129630366-129630367(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129631296-129631297(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129631404-129631405(-) m6A exon//intron       25683224//25412662//24981863
chr4:129631464-129631465(-) m6A exon//intron       25412662
chr4:129631681-129631682(-) m6A CDS//exon       25683224//24981863//25569111//22608085
chr4:129631689-129631690(-) m6A CDS//exon       25683224//24981863//25569111//22608085
chr4:129632168-129632169(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129632185-129632186(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129634452-129634453(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129634468-129634469(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129634528-129634529(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129637153-129637154(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129637160-129637161(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639269-129639270(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639275-129639276(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639309-129639310(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639330-129639331(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129639364-129639365(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129639393-129639394(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639410-129639411(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639470-129639471(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129639494-129639495(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085
chr4:129640261-129640262(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129640316-129640317(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129640343-129640344(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129640385-129640386(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129640407-129640408(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129640413-129640414(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr4:129640560-129640561(-) m6A 5'UTR//exon//intron       25683224//24981863
chr4:129640581-129640582(-) m6A 5'UTR//exon//intron       25683224//24981863
chr4:129640593-129640594(-) m6A 5'UTR//exon//intron       25683224//24981863//25569111
chr4:129640741-129640742(-) m6A 5'UTR//intron       25412662
chr4:129640768-129640769(-) m6A 5'UTR//intron       25412662
chr4:129640896-129640897(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Txlna
Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m107-1-5p
Interactor2: Txlna

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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