Basic Information:

  VIRBase ID:  

VHID00619742

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Crebrf:  NM_029870     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Crebrf
miRBase Accession/Entrez ID	MIMAT0005555	77128
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	A930001N09Rik//LRF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Crebrf	chr17:26905673(+) A-I      intronic chr17:26905667(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Crebrf	chr17:26715669-26715670(+) m6A 5'UTR       24981863 chr17:26715683-26715684(+) m6A 5'UTR       25412662//24981863//25569111 chr17:26715689-26715690(+) m6A 5'UTR       25412662//24981863//25569111 chr17:26715694-26715695(+) m6A 5'UTR       25412662//24981863//25569111 chr17:26715757-26715758(+) m6A 5'UTR       25412662//24981863//25569111 chr17:26736834-26736835(+) m6A 5'UTR//intron       24981863//25569111 chr17:26736923-26736924(+) m6A 5'UTR//intron       24981863 chr17:26736951-26736952(+) m6A 5'UTR//intron       24981863 chr17:26739561-26739562(+) m6A CDS//intron       - chr17:26739604-26739605(+) m6A CDS//intron       - chr17:26742075-26742076(+) m6A CDS//intron       25456834//25412662//24981863//25569111//22608085 chr17:26742096-26742097(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742105-26742106(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742122-26742123(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742141-26742142(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742165-26742166(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742172-26742173(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742195-26742196(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742239-26742240(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742311-26742312(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr17:26742342-26742343(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr17:26742397-26742398(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr17:26742476-26742477(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr17:26742504-26742505(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr17:26742526-26742527(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr17:26742557-26742558(+) m6A CDS//intron       25456834//25412662//24981863//25569111//22608085 chr17:26742606-26742607(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742696-26742697(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742727-26742728(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742791-26742792(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr17:26742949-26742950(+) m6A CDS//intron       25683224//24981863//25569111 chr17:26743011-26743012(+) m6A CDS//exon//intron       25683224//24981863 chr17:26771311-26771312(+) m6A CDS       25683224//24981863 chr17:26771344-26771345(+) m6A CDS       25683224//24981863 chr17:26771379-26771380(+) m6A CDS       25683224//24981863 chr17:26771420-26771421(+) m6A 3'UTR       25683224//24981863 chr17:26774381-26774382(+) m6A 3'UTR       24981863 chr17:26774419-26774420(+) m6A 3'UTR       24981863//25456834 chr17:26775459-26775460(+) m6A 3'UTR       24981863 chr17:26775489-26775490(+) m6A 3'UTR       24981863 chr17:26775790-26775791(+) m6A 3'UTR       24981863 chr17:26775819-26775820(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Crebrf	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Crebrf

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar