Detail Information

Basic Information:


  VIRBase ID:  

VHID00619565

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:           Lsm11:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m107-1-5p Lsm11
miRBase
Accession/Entrez ID		 MIMAT0005555 72290
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2210404M20Rik//AV079530

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Lsm11
chr11:45744100(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Lsm11
chr11:45930598(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Lsm11
chr11:45928465-45928466(-) m6A 3'UTR       24981863//22608085
chr11:45928573-45928574(-) m6A 3'UTR       24981863
chr11:45928585-45928586(-) m6A 3'UTR       24981863
chr11:45928594-45928595(-) m6A 3'UTR       24981863
chr11:45930967-45930968(-) m6A 3'UTR       24981863
chr11:45930980-45930981(-) m6A 3'UTR       24981863
chr11:45933422-45933423(-) m6A 3'UTR       24981863
chr11:45933449-45933450(-) m6A 3'UTR       24981863//25569111
chr11:45933462-45933463(-) m6A 3'UTR       24981863//25569111
chr11:45933564-45933565(-) m6A 3'UTR       25683224//24981863//25569111
chr11:45933785-45933786(-) m6A CDS       25412662//24981863//25569111
chr11:45933794-45933795(-) m6A CDS       25412662//24981863//25569111
chr11:45933889-45933890(-) m6A CDS       24981863//25569111
chr11:45933929-45933930(-) m6A CDS       24981863//25569111
chr11:45933955-45933956(-) m6A CDS       24981863//25569111
chr11:45937472-45937473(-) m6A CDS       25412662
chr11:45944544-45944545(-) m6A CDS       25412662
chr11:45944650-45944651(-) m6A CDS       25412662//24981863
chr11:45944662-45944663(-) m6A CDS       25412662//24981863
chr11:45944913-45944914(-) m6A 5'UTR       25412662

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m107-1-5p
Interactor2: Lsm11

Evidence Support:


Prediction-Evidence Rep
Support Database RepTar

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