Basic Information:

  VIRBase ID:  

VHID00619084

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Rufy3:  NM_001289777     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Rufy3
miRBase Accession/Entrez ID	MIMAT0005555	52822
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2810428M05Rik//6330416M07Rik//AW455998//AW538594//D5Bwg0860e//R//Ripx//Rpipx

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rufy3	chr5:88565240-88565241(+) m6A CDS       25412662//24981863//25569111 chr5:88565269-88565270(+) m6A CDS       25412662//24981863//25569111 chr5:88565302-88565303(+) m6A CDS       25412662//24981863//25569111 chr5:88565394-88565395(+) m6A CDS       25412662//24981863//25569111 chr5:88583752-88583753(+) m6A 5'UTR//exon//intron       25683224//22608085 chr5:88584211-88584212(+) m6A CDS//exon//intron       25683224//24981863//22608085 chr5:88614973-88614974(+) m6A CDS//exon       25683224//22608085 chr5:88614982-88614983(+) m6A CDS//exon       25683224//22608085 chr5:88615038-88615039(+) m6A CDS//exon       25683224//22608085 chr5:88615045-88615046(+) m6A CDS//exon       25683224//22608085 chr5:88615088-88615089(+) m6A CDS//exon       25683224//22608085 chr5:88615100-88615101(+) m6A CDS//exon       25683224//22608085 chr5:88616563-88616564(+) m6A CDS//exon       25683224//22608085 chr5:88616573-88616574(+) m6A CDS//exon       25683224//22608085 chr5:88617427-88617428(+) m6A CDS//exon       25683224//22608085 chr5:88617664-88617665(+) m6A exon//intron       25683224//22608085 chr5:88621410-88621411(+) m6A CDS       25683224//24981863//22608085 chr5:88621416-88621417(+) m6A CDS       25683224//24981863//22608085 chr5:88627260-88627261(+) m6A CDS       25683224//24981863//22608085 chr5:88628030-88628031(+) m6A CDS       25683224//24981863//22608085 chr5:88628050-88628051(+) m6A CDS       25683224//24981863//22608085 chr5:88628059-88628060(+) m6A CDS       25683224//24981863//22608085 chr5:88628072-88628073(+) m6A CDS       25683224//24981863//22608085 chr5:88628081-88628082(+) m6A CDS       25683224//24981863//22608085 chr5:88630547-88630548(+) m6A CDS       25683224//24981863 chr5:88630558-88630559(+) m6A CDS       25683224//24981863 chr5:88635199-88635200(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:88635204-88635205(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:88635209-88635210(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:88635260-88635261(+) m6A CDS       25683224//25412662//24981863//26404942//22608085 chr5:88637241-88637242(+) m6A CDS       25683224//25412662//24981863//26404942//22608085 chr5:88637352-88637353(+) m6A CDS       25683224//24981863 chr5:88638987-88638988(+) m6A CDS       24981863 chr5:88639000-88639001(+) m6A CDS       24981863 chr5:88639017-88639018(+) m6A CDS       24981863//22608085 chr5:88639037-88639038(+) m6A CDS       24981863//22608085 chr5:88639063-88639064(+) m6A CDS       24981863//26404942//22608085 chr5:88640606-88640607(+) m6A CDS//intron       24981863//26404942//22608085 chr5:88640616-88640617(+) m6A CDS//intron       24981863//26404942//22608085 chr5:88640639-88640640(+) m6A CDS//intron       24981863//26404942//22608085 chr5:88640792-88640793(+) m6A 3'UTR//intron       25683224//24981863//26404942//22608085 chr5:88640802-88640803(+) m6A 3'UTR//intron       25683224//24981863//26404942//22608085 chr5:88640915-88640916(+) m6A 3'UTR//intron       24981863 chr5:88640940-88640941(+) m6A 3'UTR//intron       24981863 chr5:88640955-88640956(+) m6A 3'UTR//intron       24981863 chr5:88642234-88642235(+) m6A 3'UTR//intron       26404942//22608085 chr5:88642265-88642266(+) m6A 3'UTR//intron       26404942//22608085 chr5:88642385-88642386(+) m6A 3'UTR//intron       25412662//22608085 chr5:88642680-88642681(+) m6A 3'UTR//intron       25683224//25412662 chr5:88642685-88642686(+) m6A 3'UTR//intron       25683224//25412662 chr5:88642969-88642970(+) m6A CDS       25683224//25412662//24981863 chr5:88642985-88642986(+) m6A CDS       25683224//25412662//24981863 chr5:88642990-88642991(+) m6A CDS       25683224//25412662//24981863 chr5:88642999-88643000(+) m6A CDS       25683224//25412662//24981863 chr5:88644085-88644086(+) m6A CDS       25683224//25412662//24981863 chr5:88644091-88644092(+) m6A CDS       25683224//25412662//24981863 chr5:88644117-88644118(+) m6A CDS       25683224//25412662//24981863 chr5:88645571-88645572(+) m6A CDS       25683224//25412662//24981863 chr5:88647242-88647243(+) m6A CDS//exon       25683224 chr5:88650211-88650212(+) m6A 3'UTR       25569111 chr5:88650229-88650230(+) m6A 3'UTR       25569111 chr5:88650274-88650275(+) m6A 3'UTR       24981863//25569111 chr5:88650309-88650310(+) m6A 3'UTR       24981863//25569111 chr5:88650322-88650323(+) m6A 3'UTR       24981863//25569111 chr5:88650338-88650339(+) m6A 3'UTR       24981863//25569111 chr5:88650777-88650778(+) m6A 3'UTR       24981863 chr5:88650891-88650892(+) m6A 3'UTR       24981863//25456834//25569111 chr5:88650965-88650966(+) m6A 3'UTR       25683224//24981863//25456834//25569111 chr5:88651018-88651019(+) m6A 3'UTR       25683224//24981863//25456834//25569111 chr5:88651050-88651051(+) m6A 3'UTR       25683224//24981863//25569111 chr5:88651077-88651078(+) m6A 3'UTR       25683224//24981863//25569111 chr5:88651087-88651088(+) m6A 3'UTR       25683224//24981863//25569111 chr5:88651104-88651105(+) m6A 3'UTR       25683224//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rufy3	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Rufy3

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar