Basic Information:

  VIRBase ID:  

VHID00619072

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m107-1-5p:  MIMAT0005555          Rragd:  NM_027491     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m107-1-5p	Rragd
miRBase Accession/Entrez ID	MIMAT0005555	52187
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5730543C08Rik//AI467523//C030003H22Rik//D4Ertd174//D4Ertd174e

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Rragd	chr4:33106395(+) A-I      3'UTR chr4:33107392(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Rragd	chr4:33019420(+) A-I intron -    22524474 chr4:33020417(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rragd	chr4:32983317-32983318(+) m6A 5'UTR       25683224//24981863//25569111 chr4:32983438-32983439(+) m6A 5'UTR       25683224//24981863//25569111 chr4:32983586-32983587(+) m6A CDS       24981863//25569111 chr4:32995043-32995044(+) m6A CDS//intron       24981863//25569111 chr4:32996002-32996003(+) m6A CDS//intron       24981863//22608085 chr4:32996064-32996065(+) m6A CDS//intron       24981863//22608085 chr4:33018756-33018757(+) m6A CDS//exon       25683224//25456834//24981863 chr4:33018777-33018778(+) m6A CDS//exon       25683224//25456834//24981863 chr4:33018802-33018803(+) m6A 3'UTR//exon       25683224//25456834//24981863 chr4:33018824-33018825(+) m6A 3'UTR       25683224//25456834//24981863 chr4:33018846-33018847(+) m6A 3'UTR       25683224//25456834//24981863 chr4:33018907-33018908(+) m6A 3'UTR       25683224//25456834//24981863 chr4:33018947-33018948(+) m6A 3'UTR       25683224//25456834//24981863 chr4:33018997-33018998(+) m6A 3'UTR       25456834//24981863 chr4:33019016-33019017(+) m6A 3'UTR       25456834//24981863 chr4:33019029-33019030(+) m6A 3'UTR       25456834//24981863 chr4:33019039-33019040(+) m6A 3'UTR       25456834//24981863 chr4:33019088-33019089(+) m6A 3'UTR       25456834//24981863//26404942 chr4:33019112-33019113(+) m6A 3'UTR       25456834//24981863//26404942 chr4:33019138-33019139(+) m6A 3'UTR       25456834//24981863 chr4:33020180-33020181(+) m6A 3'UTR       22608085 chr4:33020211-33020212(+) m6A 3'UTR       22608085 chr4:33020676-33020677(+) m6A 3'UTR       22608085 chr4:33020705-33020706(+) Y 3'UTR//exon       26075521 chr4:33021559-33021560(+) m6A 3'UTR       24981863//22608085 chr4:33021586-33021587(+) m6A 3'UTR       24981863//22608085 chr4:33021611-33021612(+) m6A 3'UTR       24981863//22608085 chr4:33021851-33021852(+) m6A 3'UTR       24981863 chr4:33021874-33021875(+) m6A 3'UTR       24981863//26404942 chr4:33021909-33021910(+) m6A 3'UTR       24981863//26404942

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m107-1-5p
Interactor2: Rragd

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar