Basic Information:

  VIRBase ID:  

VHID00617750

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Gmppb:  NM_001357682     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Gmppb
miRBase Accession/Entrez ID	MIMAT0005552	331026
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AI317178//E430010H19

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gmppb	chr9:108049291-108049292(+) m6A 5'UTR//exon       25412662//24981863 chr9:108049298-108049299(+) m6A 5'UTR//exon       25412662//24981863 chr9:108049348-108049349(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr9:108049482-108049483(+) m6A 5'UTR//exon//intron       25683224//25569111 chr9:108050860-108050861(+) m6A CDS//exon       25569111 chr9:108050867-108050868(+) m6A CDS//exon       25683224//25569111 chr9:108050918-108050919(+) m6A CDS//exon       25683224//25569111 chr9:108050936-108050937(+) m6A CDS//exon       25683224//25569111 chr9:108051022-108051023(+) m6A exon//intron       25683224 chr9:108051378-108051379(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr9:108051438-108051439(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051506-108051507(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051530-108051531(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051579-108051580(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051599-108051600(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051609-108051610(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051614-108051615(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051708-108051709(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108051796-108051797(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr9:108051853-108051854(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr9:108052062-108052063(+) m6A 3'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Gmppb	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Gmppb

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar